miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 3' -44.5 NC_005264.1 + 138205 0.66 0.999998
Target:  5'- uGggGAUUAAGCAU---GCGCUgcgcgGUGa -3'
miRNA:   3'- gCuuCUAGUUUGUGuugCGCGAa----UAC- -5'
24388 3' -44.5 NC_005264.1 + 144994 0.68 0.999952
Target:  5'- ---cGGUCGAACAgcGCGCGCgagAUGg -3'
miRNA:   3'- gcuuCUAGUUUGUguUGCGCGaa-UAC- -5'
24388 3' -44.5 NC_005264.1 + 68493 0.68 0.999964
Target:  5'- --uAGAUCGAACGCGGCGacgGCUUucUGg -3'
miRNA:   3'- gcuUCUAGUUUGUGUUGCg--CGAAu-AC- -5'
24388 3' -44.5 NC_005264.1 + 146577 0.68 0.999974
Target:  5'- uGAAGAUCGAugACAGUGuUGCgggGUGg -3'
miRNA:   3'- gCUUCUAGUUugUGUUGC-GCGaa-UAC- -5'
24388 3' -44.5 NC_005264.1 + 134774 0.68 0.999974
Target:  5'- aCGAAGA-CGGuCGCAugGCGCa---- -3'
miRNA:   3'- -GCUUCUaGUUuGUGUugCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 149653 0.68 0.999986
Target:  5'- gCGAcGGAUCcgcGCGCAGCGCGUa---- -3'
miRNA:   3'- -GCU-UCUAGuu-UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 122489 0.67 0.99999
Target:  5'- aCGAGGGucUCGGGgGCGAUGgGCUUGc- -3'
miRNA:   3'- -GCUUCU--AGUUUgUGUUGCgCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 34009 0.67 0.999995
Target:  5'- cCGGAGA-CGAugACGACGCGg----- -3'
miRNA:   3'- -GCUUCUaGUUugUGUUGCGCgaauac -5'
24388 3' -44.5 NC_005264.1 + 133240 0.67 0.999995
Target:  5'- uCGAAGc-CAAGCGcCGACGCGCa---- -3'
miRNA:   3'- -GCUUCuaGUUUGU-GUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 152616 0.68 0.999952
Target:  5'- --cGGGUCAccCGCGGCGCGUUUGg- -3'
miRNA:   3'- gcuUCUAGUuuGUGUUGCGCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 65084 0.69 0.999851
Target:  5'- uGAGGGUCAAACACGAacaccggguCGUGCc---- -3'
miRNA:   3'- gCUUCUAGUUUGUGUU---------GCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 59826 0.7 0.999595
Target:  5'- uGAGGGUCGcguACGcCAGCGCGCa---- -3'
miRNA:   3'- gCUUCUAGUu--UGU-GUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 52101 0.75 0.987843
Target:  5'- uGAGGGcgacgUCAGACAUAGCGCGUgaGUGc -3'
miRNA:   3'- gCUUCU-----AGUUUGUGUUGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 98002 0.73 0.996339
Target:  5'- cCGggGAUCcaguACGCAugGUGCUg--- -3'
miRNA:   3'- -GCuuCUAGuu--UGUGUugCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 114340 0.72 0.997805
Target:  5'- aCGAAGAcaucgUCAGccuugccGCGCAACGCGCg---- -3'
miRNA:   3'- -GCUUCU-----AGUU-------UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 48561 0.71 0.999018
Target:  5'- aCGAGGGgggCAuugaugcCACGACGCGCUUcgcgGUGg -3'
miRNA:   3'- -GCUUCUa--GUuu-----GUGUUGCGCGAA----UAC- -5'
24388 3' -44.5 NC_005264.1 + 87582 0.71 0.999018
Target:  5'- ---uGAUU-AACACGACGCGCUUGc- -3'
miRNA:   3'- gcuuCUAGuUUGUGUUGCGCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 148866 0.71 0.999361
Target:  5'- aGAGGAgagCGuACGCAucuuuggcGCGCGCUUAUc -3'
miRNA:   3'- gCUUCUa--GUuUGUGU--------UGCGCGAAUAc -5'
24388 3' -44.5 NC_005264.1 + 123143 0.71 0.999489
Target:  5'- cCGAGGGUguccccucugcCAAACACGGC-CGCUUGUc -3'
miRNA:   3'- -GCUUCUA-----------GUUUGUGUUGcGCGAAUAc -5'
24388 3' -44.5 NC_005264.1 + 71123 0.7 0.999595
Target:  5'- uGAgcAGAUaaaGGACACAGCGCGCc---- -3'
miRNA:   3'- gCU--UCUAg--UUUGUGUUGCGCGaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.