miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 3' -44.5 NC_005264.1 + 3462 0.67 0.99999
Target:  5'- aCGAGGGucUCGGGgGCGAUGgGCUUGc- -3'
miRNA:   3'- -GCUUCU--AGUUUgUGUUGCgCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 4116 0.71 0.999489
Target:  5'- cCGAGGGUguccccucugcCAAACACGGC-CGCUUGUc -3'
miRNA:   3'- -GCUUCUA-----------GUUUGUGUUGcGCGAAUAc -5'
24388 3' -44.5 NC_005264.1 + 20016 0.75 0.979955
Target:  5'- aGAGGGUCuacCACGGCGCGCUc--- -3'
miRNA:   3'- gCUUCUAGuuuGUGUUGCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 21296 0.66 0.999999
Target:  5'- gGggGAcgCGGAC-CAugGCGgaCUUAUGg -3'
miRNA:   3'- gCuuCUa-GUUUGuGUugCGC--GAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 22138 0.66 0.999999
Target:  5'- ------aCGAGCGCGACGCGCg---- -3'
miRNA:   3'- gcuucuaGUUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 24624 0.67 0.99999
Target:  5'- cCGAuuGGUCAccGCGCAGCGCauGCUUAa- -3'
miRNA:   3'- -GCUu-CUAGUu-UGUGUUGCG--CGAAUac -5'
24388 3' -44.5 NC_005264.1 + 30626 0.68 0.999986
Target:  5'- gCGAcGGAUCcgcGCGCAGCGCGUa---- -3'
miRNA:   3'- -GCU-UCUAGuu-UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 33589 0.68 0.999952
Target:  5'- --cGGGUCAccCGCGGCGCGUUUGg- -3'
miRNA:   3'- gcuUCUAGUuuGUGUUGCGCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 34009 0.67 0.999995
Target:  5'- cCGGAGA-CGAugACGACGCGg----- -3'
miRNA:   3'- -GCUUCUaGUUugUGUUGCGCgaauac -5'
24388 3' -44.5 NC_005264.1 + 45731 0.71 0.999361
Target:  5'- aGAAGAUCu---GCAGCGCGCg---- -3'
miRNA:   3'- gCUUCUAGuuugUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 48561 0.71 0.999018
Target:  5'- aCGAGGGgggCAuugaugcCACGACGCGCUUcgcgGUGg -3'
miRNA:   3'- -GCUUCUa--GUuu-----GUGUUGCGCGAA----UAC- -5'
24388 3' -44.5 NC_005264.1 + 49230 0.66 0.999999
Target:  5'- gCGAcAGGUCAuGCACGAgUGCGCg---- -3'
miRNA:   3'- -GCU-UCUAGUuUGUGUU-GCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 49346 0.69 0.999886
Target:  5'- aCGAGGGUCGcgguuGGCACu-CGCGCgaccGUGg -3'
miRNA:   3'- -GCUUCUAGU-----UUGUGuuGCGCGaa--UAC- -5'
24388 3' -44.5 NC_005264.1 + 52101 0.75 0.987843
Target:  5'- uGAGGGcgacgUCAGACAUAGCGCGUgaGUGc -3'
miRNA:   3'- gCUUCU-----AGUUUGUGUUGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 53463 0.68 0.999952
Target:  5'- cCGAcuuGAcUAGGCGCAACGCGCa---- -3'
miRNA:   3'- -GCUu--CUaGUUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 54406 0.66 0.999999
Target:  5'- aGAAG-UCGuuguuGCGCGGCGCGCc---- -3'
miRNA:   3'- gCUUCuAGUu----UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 55756 0.66 0.999998
Target:  5'- -uGAGAgCGAACACAACGCucgcgcugagucuGCUUAa- -3'
miRNA:   3'- gcUUCUaGUUUGUGUUGCG-------------CGAAUac -5'
24388 3' -44.5 NC_005264.1 + 56394 0.66 0.999998
Target:  5'- uGAGGcgcgacgaucgcauAUCGAGCGCGGCGCcgucgaGCUUcgGg -3'
miRNA:   3'- gCUUC--------------UAGUUUGUGUUGCG------CGAAuaC- -5'
24388 3' -44.5 NC_005264.1 + 59826 0.7 0.999595
Target:  5'- uGAGGGUCGcguACGcCAGCGCGCa---- -3'
miRNA:   3'- gCUUCUAGUu--UGU-GUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 65084 0.69 0.999851
Target:  5'- uGAGGGUCAAACACGAacaccggguCGUGCc---- -3'
miRNA:   3'- gCUUCUAGUUUGUGUU---------GCGCGaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.