miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 3' -44.5 NC_005264.1 + 119386 1.12 0.030303
Target:  5'- gCGAAGAUCAAACACAACGCGCUUAUGg -3'
miRNA:   3'- -GCUUCUAGUUUGUGUUGCGCGAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 110866 0.78 0.932814
Target:  5'- gCGAAGAUCGagcgugagcgcgccGACACGACGCGUUa--- -3'
miRNA:   3'- -GCUUCUAGU--------------UUGUGUUGCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 87583 0.78 0.934439
Target:  5'- aCGAGGA-CGAACACGGCGCGUg---- -3'
miRNA:   3'- -GCUUCUaGUUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 20016 0.75 0.979955
Target:  5'- aGAGGGUCuacCACGGCGCGCUc--- -3'
miRNA:   3'- gCUUCUAGuuuGUGUUGCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 106433 0.75 0.987681
Target:  5'- aCGAAGAUCcuGCACGagcggcuucggagGCGCGCUg--- -3'
miRNA:   3'- -GCUUCUAGuuUGUGU-------------UGCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 52101 0.75 0.987843
Target:  5'- uGAGGGcgacgUCAGACAUAGCGCGUgaGUGc -3'
miRNA:   3'- gCUUCU-----AGUUUGUGUUGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 72505 0.74 0.991985
Target:  5'- uGAAGAUCugcgccgagAGGCGCGugGCGCUUu-- -3'
miRNA:   3'- gCUUCUAG---------UUUGUGUugCGCGAAuac -5'
24388 3' -44.5 NC_005264.1 + 146500 0.73 0.994059
Target:  5'- cCGAGcGAUCGAGCAauaAACGCGCa---- -3'
miRNA:   3'- -GCUU-CUAGUUUGUg--UUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 100361 0.73 0.994059
Target:  5'- aGAGGAcgCGcGCACGACGCGCa---- -3'
miRNA:   3'- gCUUCUa-GUuUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 95759 0.73 0.99492
Target:  5'- gGggGAUCuguACGCGGCGUGCg---- -3'
miRNA:   3'- gCuuCUAGuu-UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 98002 0.73 0.996339
Target:  5'- cCGggGAUCcaguACGCAugGUGCUg--- -3'
miRNA:   3'- -GCuuCUAGuu--UGUGUugCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 114340 0.72 0.997805
Target:  5'- aCGAAGAcaucgUCAGccuugccGCGCAACGCGCg---- -3'
miRNA:   3'- -GCUUCU-----AGUU-------UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 107498 0.72 0.997845
Target:  5'- aCGAAGGccgccgCGAGCgACAACGCGCacGUGa -3'
miRNA:   3'- -GCUUCUa-----GUUUG-UGUUGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 127196 0.72 0.997845
Target:  5'- gCGAAGcgCAggUACAACGUGCc---- -3'
miRNA:   3'- -GCUUCuaGUuuGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 87582 0.71 0.999018
Target:  5'- ---uGAUU-AACACGACGCGCUUGc- -3'
miRNA:   3'- gcuuCUAGuUUGUGUUGCGCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 48561 0.71 0.999018
Target:  5'- aCGAGGGgggCAuugaugcCACGACGCGCUUcgcgGUGg -3'
miRNA:   3'- -GCUUCUa--GUuu-----GUGUUGCGCGAA----UAC- -5'
24388 3' -44.5 NC_005264.1 + 148866 0.71 0.999361
Target:  5'- aGAGGAgagCGuACGCAucuuuggcGCGCGCUUAUc -3'
miRNA:   3'- gCUUCUa--GUuUGUGU--------UGCGCGAAUAc -5'
24388 3' -44.5 NC_005264.1 + 45731 0.71 0.999361
Target:  5'- aGAAGAUCu---GCAGCGCGCg---- -3'
miRNA:   3'- gCUUCUAGuuugUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 123143 0.71 0.999489
Target:  5'- cCGAGGGUguccccucugcCAAACACGGC-CGCUUGUc -3'
miRNA:   3'- -GCUUCUA-----------GUUUGUGUUGcGCGAAUAc -5'
24388 3' -44.5 NC_005264.1 + 4116 0.71 0.999489
Target:  5'- cCGAGGGUguccccucugcCAAACACGGC-CGCUUGUc -3'
miRNA:   3'- -GCUUCUA-----------GUUUGUGUUGcGCGAAUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.