Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24388 | 5' | -61.2 | NC_005264.1 | + | 121915 | 0.68 | 0.578959 |
Target: 5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3' miRNA: 3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 100183 | 0.68 | 0.578959 |
Target: 5'- cGCGCcaacgaguucggUCGCGuGCUgcgcuuggacGGCGGGCGAgaagacCUCg -3' miRNA: 3'- aCGUG------------AGCGC-CGA----------CCGCCCGCUa-----GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 76505 | 0.67 | 0.596694 |
Target: 5'- cGCAUcguUCGCGGCcacaaacaacugGGCcuGCGAUCUCg -3' miRNA: 3'- aCGUG---AGCGCCGa-----------CCGccCGCUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 17351 | 0.67 | 0.59867 |
Target: 5'- gUGC-CUucCGCGGCagcuggcGGCGGcGCGGUCUg -3' miRNA: 3'- -ACGuGA--GCGCCGa------CCGCC-CGCUAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 102647 | 0.66 | 0.648235 |
Target: 5'- cGCACUCGCuuGGUauuguggGGCGaGCGGUCg- -3' miRNA: 3'- aCGUGAGCG--CCGa------CCGCcCGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 35789 | 0.66 | 0.647243 |
Target: 5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3' miRNA: 3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 139732 | 0.67 | 0.638317 |
Target: 5'- -uCGCUCGUuGGgaGGCGGGCGGc--- -3' miRNA: 3'- acGUGAGCG-CCgaCCGCCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 66469 | 0.67 | 0.637325 |
Target: 5'- gGCACcgcCGCGGCcagacucaaugcuUGGCGGGCugcgcggcGcgCUCg -3' miRNA: 3'- aCGUGa--GCGCCG-------------ACCGCCCG--------CuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 9902 | 0.67 | 0.628394 |
Target: 5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3' miRNA: 3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 22231 | 0.68 | 0.578959 |
Target: 5'- cGC-CUCGuCGGC-GGUcuGGGCGGUCg- -3' miRNA: 3'- aCGuGAGC-GCCGaCCG--CCCGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 2889 | 0.68 | 0.578959 |
Target: 5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3' miRNA: 3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 2849 | 0.66 | 0.658141 |
Target: 5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3' miRNA: 3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 2473 | 0.66 | 0.671975 |
Target: 5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3' miRNA: 3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37142 | 0.66 | 0.677887 |
Target: 5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3' miRNA: 3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 123484 | 0.66 | 0.677887 |
Target: 5'- gGCAUgcgguggccgCGCGGUUGcUGGGCGAUgugCUCg -3' miRNA: 3'- aCGUGa---------GCGCCGACcGCCCGCUA---GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 48085 | 0.66 | 0.677887 |
Target: 5'- cGCaauACUCGCGGCcGcGCGGGU--UCUg -3' miRNA: 3'- aCG---UGAGCGCCGaC-CGCCCGcuAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 95591 | 0.66 | 0.687711 |
Target: 5'- gGCucuCUCGUGGCU-GCGGGauuuCGggCUCu -3' miRNA: 3'- aCGu--GAGCGCCGAcCGCCC----GCuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 72727 | 0.66 | 0.697491 |
Target: 5'- cGCACgccaCGCGGUacacuucGGCGGGCcuguccgcuggGAUCUg -3' miRNA: 3'- aCGUGa---GCGCCGa------CCGCCCG-----------CUAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 100412 | 0.66 | 0.697491 |
Target: 5'- cGCACUagaGCGGaucaaGUGGGUGAUCg- -3' miRNA: 3'- aCGUGAg--CGCCgac--CGCCCGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 119422 | 1.09 | 0.00089 |
Target: 5'- uUGCACUCGCGGCUGGCGGGCGAUCUCg -3' miRNA: 3'- -ACGUGAGCGCCGACCGCCCGCUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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