miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 156169 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 106254 0.67 0.617482
Target:  5'- gGCGCUCGCGccuGCUgacGGCGGauuuaacGCGAUCc- -3'
miRNA:   3'- aCGUGAGCGC---CGA---CCGCC-------CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 79226 0.67 0.618474
Target:  5'- cGUGCagGCGGC-GGCGGGgGuGUCUUu -3'
miRNA:   3'- aCGUGagCGCCGaCCGCCCgC-UAGAG- -5'
24388 5' -61.2 NC_005264.1 + 128928 0.67 0.628394
Target:  5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3'
miRNA:   3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 154815 0.66 0.647243
Target:  5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3'
miRNA:   3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 51109 0.66 0.657151
Target:  5'- cUGCggucuGCUCGCGccucgacGCUGGCGGGCa----- -3'
miRNA:   3'- -ACG-----UGAGCGC-------CGACCGCCCGcuagag -5'
24388 5' -61.2 NC_005264.1 + 121875 0.66 0.658141
Target:  5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3'
miRNA:   3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 16408 0.66 0.668027
Target:  5'- gGCACUCG-GGgaGGCaaGGGCcg-CUCg -3'
miRNA:   3'- aCGUGAGCgCCgaCCG--CCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 121500 0.66 0.671975
Target:  5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3'
miRNA:   3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 86773 0.67 0.59867
Target:  5'- cGaCGCUCGCGGCgucGCG-GCG-UCUCu -3'
miRNA:   3'- aC-GUGAGCGCCGac-CGCcCGCuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 17351 0.67 0.59867
Target:  5'- gUGC-CUucCGCGGCagcuggcGGCGGcGCGGUCUg -3'
miRNA:   3'- -ACGuGA--GCGCCGa------CCGCC-CGCUAGAg -5'
24388 5' -61.2 NC_005264.1 + 76505 0.67 0.596694
Target:  5'- cGCAUcguUCGCGGCcacaaacaacugGGCcuGCGAUCUCg -3'
miRNA:   3'- aCGUG---AGCGCCGa-----------CCGccCGCUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 162252 0.74 0.254774
Target:  5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3'
miRNA:   3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5'
24388 5' -61.2 NC_005264.1 + 123634 0.71 0.379896
Target:  5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3'
miRNA:   3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5'
24388 5' -61.2 NC_005264.1 + 3713 0.71 0.412754
Target:  5'- aGUACUUGCcGCgGGCGGGCu-UCUCc -3'
miRNA:   3'- aCGUGAGCGcCGaCCGCCCGcuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 135940 0.68 0.549673
Target:  5'- gGCACagGCGGCcGG-GGGCGAgcgaauuaCUCg -3'
miRNA:   3'- aCGUGagCGCCGaCCgCCCGCUa-------GAG- -5'
24388 5' -61.2 NC_005264.1 + 34481 0.68 0.55647
Target:  5'- cGCGCUUcaggaggacguucgGCGGgaaUGGgGGGCGGUgUCa -3'
miRNA:   3'- aCGUGAG--------------CGCCg--ACCgCCCGCUAgAG- -5'
24388 5' -61.2 NC_005264.1 + 156247 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 121915 0.68 0.578959
Target:  5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3'
miRNA:   3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 100183 0.68 0.578959
Target:  5'- cGCGCcaacgaguucggUCGCGuGCUgcgcuuggacGGCGGGCGAgaagacCUCg -3'
miRNA:   3'- aCGUG------------AGCGC-CGA----------CCGCCCGCUa-----GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.