Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24388 | 5' | -61.2 | NC_005264.1 | + | 119422 | 1.09 | 0.00089 |
Target: 5'- uUGCACUCGCGGCUGGCGGGCGAUCUCg -3' miRNA: 3'- -ACGUGAGCGCCGACCGCCCGCUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156611 | 0.74 | 0.248919 |
Target: 5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3' miRNA: 3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37584 | 0.74 | 0.248919 |
Target: 5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3' miRNA: 3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 162252 | 0.74 | 0.254774 |
Target: 5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3' miRNA: 3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 43225 | 0.74 | 0.254774 |
Target: 5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3' miRNA: 3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156422 | 0.73 | 0.305728 |
Target: 5'- aGUGCcUGCGGCUGGCGGcgGUGAUCg- -3' miRNA: 3'- aCGUGaGCGCCGACCGCC--CGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 81889 | 0.72 | 0.356428 |
Target: 5'- gGCGCcuUgGCGGCgaugGGCGGGCGAg--- -3' miRNA: 3'- aCGUG--AgCGCCGa---CCGCCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 123634 | 0.71 | 0.379896 |
Target: 5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3' miRNA: 3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 4607 | 0.71 | 0.379896 |
Target: 5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3' miRNA: 3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 105652 | 0.71 | 0.387945 |
Target: 5'- gGCACggGCGGCgcuuugccGGCGGcagaccauGCGAUCUCu -3' miRNA: 3'- aCGUGagCGCCGa-------CCGCC--------CGCUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 3713 | 0.71 | 0.412754 |
Target: 5'- aGUACUUGCcGCgGGCGGGCu-UCUCc -3' miRNA: 3'- aCGUGAGCGcCGaCCGCCCGcuAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 100475 | 0.7 | 0.435902 |
Target: 5'- cGCugUCGCGGCggccagGGCccuggagggguugcGGGCGAaagccCUCa -3' miRNA: 3'- aCGugAGCGCCGa-----CCG--------------CCCGCUa----GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 127836 | 0.7 | 0.43852 |
Target: 5'- uUGC-CUcCGCGGC-GGCcGGCGGUCUa -3' miRNA: 3'- -ACGuGA-GCGCCGaCCGcCCGCUAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 26361 | 0.7 | 0.46518 |
Target: 5'- gUGCGC-CGCGGCaGGCugcgcGGCGccGUCUCu -3' miRNA: 3'- -ACGUGaGCGCCGaCCGc----CCGC--UAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 140142 | 0.69 | 0.477908 |
Target: 5'- cGCACUCGUGGCUauucauagguuucgaGGaagaGcGGCGAgacgCUCg -3' miRNA: 3'- aCGUGAGCGCCGA---------------CCg---C-CCGCUa---GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 129588 | 0.68 | 0.529448 |
Target: 5'- cGCGCUCuGCaGGCgcugcGGCGcGGCGGcgaagcuUCUCg -3' miRNA: 3'- aCGUGAG-CG-CCGa----CCGC-CCGCU-------AGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 135940 | 0.68 | 0.549673 |
Target: 5'- gGCACagGCGGCcGG-GGGCGAgcgaauuaCUCg -3' miRNA: 3'- aCGUGagCGCCGaCCgCCCGCUa-------GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 34481 | 0.68 | 0.55647 |
Target: 5'- cGCGCUUcaggaggacguucgGCGGgaaUGGgGGGCGGUgUCa -3' miRNA: 3'- aCGUGAG--------------CGCCg--ACCgCCCGCUAgAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37220 | 0.68 | 0.55939 |
Target: 5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3' miRNA: 3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156247 | 0.68 | 0.55939 |
Target: 5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3' miRNA: 3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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