miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 37976 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 40966 0.67 0.964635
Target:  5'- -cAGCGgGCGACgGCGCGAGc----- -3'
miRNA:   3'- caUUGCgCGCUGgUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 43199 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 43730 0.67 0.964635
Target:  5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3'
miRNA:   3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 48033 0.67 0.957591
Target:  5'- aUGGCGCGUGGCCaAUGCGcauGGagcaUUGGc -3'
miRNA:   3'- cAUUGCGCGCUGG-UGCGCu--CCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 48081 0.71 0.851328
Target:  5'- aUAGCGCaauacucGCGGCCGCGCG-GGUUc-- -3'
miRNA:   3'- cAUUGCG-------CGCUGGUGCGCuCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 49366 0.7 0.895667
Target:  5'- ---uCGCGCGACCGuggcacgacCGCGGGGUc-GGu -3'
miRNA:   3'- cauuGCGCGCUGGU---------GCGCUCCAaaCC- -5'
24389 3' -53.2 NC_005264.1 + 51808 0.66 0.973595
Target:  5'- ---cCGCGCGAgCCAcCGCuucgaaccaggaGAGGggUGGg -3'
miRNA:   3'- cauuGCGCGCU-GGU-GCG------------CUCCaaACC- -5'
24389 3' -53.2 NC_005264.1 + 52208 0.66 0.973595
Target:  5'- cGUGGgGCGCGGugGCGCGAGc--UGGu -3'
miRNA:   3'- -CAUUgCGCGCUggUGCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 54422 0.7 0.882031
Target:  5'- -cGGCGCGcCGACUaggGCGUGGGGUUg-- -3'
miRNA:   3'- caUUGCGC-GCUGG---UGCGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 64529 0.66 0.980783
Target:  5'- ---cCGCGCcGCCGCG-GAGGg--GGg -3'
miRNA:   3'- cauuGCGCGcUGGUGCgCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 70195 0.68 0.93093
Target:  5'- -cGGCGCGagGGCCACGCGgcAGGgaUGu -3'
miRNA:   3'- caUUGCGCg-CUGGUGCGC--UCCaaACc -5'
24389 3' -53.2 NC_005264.1 + 70582 0.68 0.93093
Target:  5'- cGUGGCGaagaGCGcGCUugGCGAGGcg-GGc -3'
miRNA:   3'- -CAUUGCg---CGC-UGGugCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 74238 0.67 0.970814
Target:  5'- cGUAGCGCGCuGGCCGCGCuccagacacGGcGGUagaggcgGGg -3'
miRNA:   3'- -CAUUGCGCG-CUGGUGCG---------CU-CCAaa-----CC- -5'
24389 3' -53.2 NC_005264.1 + 76349 0.72 0.773815
Target:  5'- --cGCGCgGCGACUGCGCGcAGGcgcgUUGGu -3'
miRNA:   3'- cauUGCG-CGCUGGUGCGC-UCCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 77022 0.67 0.957591
Target:  5'- aGUGACGCGCGugUcgcuaACGCuAGGaagGGu -3'
miRNA:   3'- -CAUUGCGCGCugG-----UGCGcUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 77414 0.68 0.93093
Target:  5'- aUAugGauaGCGACgACGUGAGGg-UGGu -3'
miRNA:   3'- cAUugCg--CGCUGgUGCGCUCCaaACC- -5'
24389 3' -53.2 NC_005264.1 + 78596 0.67 0.96783
Target:  5'- -cAGCGCGUGuCCACGCGguAGGc---- -3'
miRNA:   3'- caUUGCGCGCuGGUGCGC--UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 80643 0.71 0.822442
Target:  5'- -gGACGCGCGGCCACGaCacggccgcucuucaaGAGGgccaUGGc -3'
miRNA:   3'- caUUGCGCGCUGGUGC-G---------------CUCCaa--ACC- -5'
24389 3' -53.2 NC_005264.1 + 82651 0.69 0.902138
Target:  5'- ---cCGCGCcucuccuuucaaGACCGCGCGcAGGUUaucggUGGg -3'
miRNA:   3'- cauuGCGCG------------CUGGUGCGC-UCCAA-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.