miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 1204 0.67 0.961223
Target:  5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3'
miRNA:   3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 2509 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 3179 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 3399 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 6488 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 7929 0.68 0.935968
Target:  5'- --cGCGCGCGuCCACGCGucGUc--- -3'
miRNA:   3'- cauUGCGCGCuGGUGCGCucCAaacc -5'
24389 3' -53.2 NC_005264.1 + 11053 0.67 0.957591
Target:  5'- -cAAgGCGgGGCCugGCGGGGc---- -3'
miRNA:   3'- caUUgCGCgCUGGugCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 14888 0.68 0.935968
Target:  5'- -aGACGCGCGuCCAUGCuuauGGacgUGGa -3'
miRNA:   3'- caUUGCGCGCuGGUGCGcu--CCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 16674 0.68 0.935968
Target:  5'- --cACGCGaCGugCAUGCGAGGc---- -3'
miRNA:   3'- cauUGCGC-GCugGUGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 19487 0.7 0.895667
Target:  5'- cUGACGCGC-ACC-UGCGAGGUUc-- -3'
miRNA:   3'- cAUUGCGCGcUGGuGCGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 23217 0.7 0.874876
Target:  5'- ---cCGUGCcGCCGCGCGAGuugUUGGa -3'
miRNA:   3'- cauuGCGCGcUGGUGCGCUCca-AACC- -5'
24389 3' -53.2 NC_005264.1 + 31660 0.72 0.773815
Target:  5'- uGUGACGCGa-ACUGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcUGGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 33267 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 33385 0.66 0.982818
Target:  5'- gGUAGCGCuuuggcgaugGCGACCGCgGUGAug-UUGGg -3'
miRNA:   3'- -CAUUGCG----------CGCUGGUG-CGCUccaAACC- -5'
24389 3' -53.2 NC_005264.1 + 33944 0.67 0.961223
Target:  5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3'
miRNA:   3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5'
24389 3' -53.2 NC_005264.1 + 35473 0.67 0.96783
Target:  5'- cUGACGCgagagugccGCGGCCGauCGCGAcGGcUUGGu -3'
miRNA:   3'- cAUUGCG---------CGCUGGU--GCGCU-CCaAACC- -5'
24389 3' -53.2 NC_005264.1 + 36215 0.78 0.464829
Target:  5'- --uGCGCGCaGACCAgagccCGCGAGGUUUaGGg -3'
miRNA:   3'- cauUGCGCG-CUGGU-----GCGCUCCAAA-CC- -5'
24389 3' -53.2 NC_005264.1 + 36508 0.74 0.664831
Target:  5'- -aAGCGCGCGGCCuCGaCGAGGcg-GGc -3'
miRNA:   3'- caUUGCGCGCUGGuGC-GCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 37564 0.67 0.96783
Target:  5'- -cAGCGCGCcGCCGCG-GAGGg---- -3'
miRNA:   3'- caUUGCGCGcUGGUGCgCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 37588 0.67 0.961223
Target:  5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3'
miRNA:   3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.