miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 119215 1.1 0.005397
Target:  5'- cGUAACGCGCGACCACGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGCGCGCUGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 36215 0.78 0.464829
Target:  5'- --uGCGCGCaGACCAgagccCGCGAGGUUUaGGg -3'
miRNA:   3'- cauUGCGCG-CUGGU-----GCGCUCCAAA-CC- -5'
24389 3' -53.2 NC_005264.1 + 155242 0.78 0.464829
Target:  5'- --uGCGCGCaGACCAgagccCGCGAGGUUUaGGg -3'
miRNA:   3'- cauUGCGCG-CUGGU-----GCGCUCCAAA-CC- -5'
24389 3' -53.2 NC_005264.1 + 36508 0.74 0.664831
Target:  5'- -aAGCGCGCGGCCuCGaCGAGGcg-GGc -3'
miRNA:   3'- caUUGCGCGCUGGuGC-GCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 122206 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 3179 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 152294 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 33267 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 31660 0.72 0.773815
Target:  5'- uGUGACGCGa-ACUGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcUGGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 76349 0.72 0.773815
Target:  5'- --cGCGCgGCGACUGCGCGcAGGcgcgUUGGu -3'
miRNA:   3'- cauUGCG-CGCUGGUGCGC-UCCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 146080 0.72 0.792334
Target:  5'- -cAGCGCGCccCCGCGCG-GGUcUUGGu -3'
miRNA:   3'- caUUGCGCGcuGGUGCGCuCCA-AACC- -5'
24389 3' -53.2 NC_005264.1 + 133066 0.72 0.801379
Target:  5'- cGUGGCGUGCGAgCCGCgaGCGAGcugUGGu -3'
miRNA:   3'- -CAUUGCGCGCU-GGUG--CGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 80643 0.71 0.822442
Target:  5'- -gGACGCGCGGCCACGaCacggccgcucuucaaGAGGgccaUGGc -3'
miRNA:   3'- caUUGCGCGCUGGUGC-G---------------CUCCaa--ACC- -5'
24389 3' -53.2 NC_005264.1 + 159539 0.71 0.827555
Target:  5'- -cGGCGCGCGAucCCGCGCGAGc----- -3'
miRNA:   3'- caUUGCGCGCU--GGUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 48081 0.71 0.851328
Target:  5'- aUAGCGCaauacucGCGGCCGCGCG-GGUUc-- -3'
miRNA:   3'- cAUUGCG-------CGCUGGUGCGCuCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 114191 0.71 0.851328
Target:  5'- gGUAACGuCGCGGaucuggauggcacCCGCGCaAGGUUUGa -3'
miRNA:   3'- -CAUUGC-GCGCU-------------GGUGCGcUCCAAACc -5'
24389 3' -53.2 NC_005264.1 + 153373 0.71 0.859914
Target:  5'- -aGACGCGCGAagcgUUGCGCGAGGg---- -3'
miRNA:   3'- caUUGCGCGCU----GGUGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 23217 0.7 0.874876
Target:  5'- ---cCGUGCcGCCGCGCGAGuugUUGGa -3'
miRNA:   3'- cauuGCGCGcUGGUGCGCUCca-AACC- -5'
24389 3' -53.2 NC_005264.1 + 2509 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 121536 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.