miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 48033 0.67 0.957591
Target:  5'- aUGGCGCGUGGCCaAUGCGcauGGagcaUUGGc -3'
miRNA:   3'- cAUUGCGCGCUGG-UGCGCu--CCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 148305 0.69 0.914374
Target:  5'- --cGCGCGCGugCGCGCcGGuGUUcguaUGGu -3'
miRNA:   3'- cauUGCGCGCugGUGCGcUC-CAA----ACC- -5'
24389 3' -53.2 NC_005264.1 + 70582 0.68 0.93093
Target:  5'- cGUGGCGaagaGCGcGCUugGCGAGGcg-GGc -3'
miRNA:   3'- -CAUUGCg---CGC-UGGugCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 83187 0.68 0.93093
Target:  5'- uGUAACagaGUuaACUGCGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGcg-CGc-UGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 162226 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 7929 0.68 0.935968
Target:  5'- --cGCGCGCGuCCACGCGucGUc--- -3'
miRNA:   3'- cauUGCGCGCuGGUGCGCucCAaacc -5'
24389 3' -53.2 NC_005264.1 + 14888 0.68 0.935968
Target:  5'- -aGACGCGCGuCCAUGCuuauGGacgUGGa -3'
miRNA:   3'- caUUGCGCGCuGGUGCGcu--CCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 157003 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 11053 0.67 0.957591
Target:  5'- -cAAgGCGgGGCCugGCGGGGc---- -3'
miRNA:   3'- caUUgCGCgCUGGugCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 82651 0.69 0.902138
Target:  5'- ---cCGCGCcucuccuuucaaGACCGCGCGcAGGUUaucggUGGg -3'
miRNA:   3'- cauuGCGCG------------CUGGUGCGC-UCCAA-----ACC- -5'
24389 3' -53.2 NC_005264.1 + 150687 0.69 0.902138
Target:  5'- uGUGACGCGaa--CGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcugGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 19487 0.7 0.895667
Target:  5'- cUGACGCGC-ACC-UGCGAGGUUc-- -3'
miRNA:   3'- cAUUGCGCGcUGGuGCGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 36508 0.74 0.664831
Target:  5'- -aAGCGCGCGGCCuCGaCGAGGcg-GGc -3'
miRNA:   3'- caUUGCGCGCUGGuGC-GCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 122206 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 152294 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 76349 0.72 0.773815
Target:  5'- --cGCGCgGCGACUGCGCGcAGGcgcgUUGGu -3'
miRNA:   3'- cauUGCG-CGCUGGUGCGC-UCCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 133066 0.72 0.801379
Target:  5'- cGUGGCGUGCGAgCCGCgaGCGAGcugUGGu -3'
miRNA:   3'- -CAUUGCGCGCU-GGUG--CGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 23217 0.7 0.874876
Target:  5'- ---cCGUGCcGCCGCGCGAGuugUUGGa -3'
miRNA:   3'- cauuGCGCGcUGGUGCGCUCca-AACC- -5'
24389 3' -53.2 NC_005264.1 + 121536 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 54422 0.7 0.882031
Target:  5'- -cGGCGCGcCGACUaggGCGUGGGGUUg-- -3'
miRNA:   3'- caUUGCGC-GCUGG---UGCGCUCCAAacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.