miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 47134 0.68 0.940508
Target:  5'- -gCCGGAuGACUUGGUGGCgaUGAUGGCAg -3'
miRNA:   3'- ugGGUCU-UUGGAUUACCG--GCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 50239 0.66 0.978905
Target:  5'- uCCCGGuAGCCUGuuugGUGGCCucuGGgGACGc -3'
miRNA:   3'- uGGGUCuUUGGAU----UACCGG---CUgCUGU- -5'
24389 5' -52.5 NC_005264.1 + 53317 0.7 0.900977
Target:  5'- uGCCCAGggGCUgcuUGGCCaGCaggGGCAg -3'
miRNA:   3'- -UGGGUCuuUGGauuACCGGcUG---CUGU- -5'
24389 5' -52.5 NC_005264.1 + 53930 0.68 0.940508
Target:  5'- gGCUCGGGuuCCUcGUcGCUGACGACGa -3'
miRNA:   3'- -UGGGUCUuuGGAuUAcCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 54167 0.66 0.983171
Target:  5'- gUgCGGAAACCgcgcccUGGCCgggaGACGACAc -3'
miRNA:   3'- uGgGUCUUUGGauu---ACCGG----CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 62362 0.66 0.983171
Target:  5'- cUCCAG-GGCCc--UGGCCGccGCGACAg -3'
miRNA:   3'- uGGGUCuUUGGauuACCGGC--UGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 65727 0.68 0.94516
Target:  5'- aGCUCAGAGGCCaacucgcgcUGGCCGuuaACGACc -3'
miRNA:   3'- -UGGGUCUUUGGauu------ACCGGC---UGCUGu -5'
24389 5' -52.5 NC_005264.1 + 68324 0.69 0.93046
Target:  5'- uGCCCuc---CCacGUGGCCGACGGCu -3'
miRNA:   3'- -UGGGucuuuGGauUACCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 72269 0.67 0.973887
Target:  5'- cGCUgCAGAGGCgUAcUGGCCGGCaACGa -3'
miRNA:   3'- -UGG-GUCUUUGgAUuACCGGCUGcUGU- -5'
24389 5' -52.5 NC_005264.1 + 76011 0.77 0.5335
Target:  5'- cCCUAGaAGAUCUGAagucGGCCGACGACAg -3'
miRNA:   3'- uGGGUC-UUUGGAUUa---CCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 78188 0.69 0.913514
Target:  5'- uGCCCGGaAAGCCgGAUGcGCgGAgCGGCAu -3'
miRNA:   3'- -UGGGUC-UUUGGaUUAC-CGgCU-GCUGU- -5'
24389 5' -52.5 NC_005264.1 + 79892 0.68 0.948271
Target:  5'- gGCUCAG--GCCUGgucuuugcgugcgcGUGGCCGACGuCu -3'
miRNA:   3'- -UGGGUCuuUGGAU--------------UACCGGCUGCuGu -5'
24389 5' -52.5 NC_005264.1 + 80221 0.66 0.981128
Target:  5'- -gUgAGAAGCUUG--GGCCGugGACGg -3'
miRNA:   3'- ugGgUCUUUGGAUuaCCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 80778 0.68 0.949568
Target:  5'- cGCgCAGAGAUCUGGccUGGCCGuagccauCGAUAc -3'
miRNA:   3'- -UGgGUCUUUGGAUU--ACCGGCu------GCUGU- -5'
24389 5' -52.5 NC_005264.1 + 85077 0.72 0.778913
Target:  5'- cCCCAGGuccGCCgcaccguuugUGGUGGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUu--UGG----------AUUACCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 86145 0.71 0.841458
Target:  5'- aGCCUcgucacgguGGGcgacAGCCUGGUGGCCGugGAa- -3'
miRNA:   3'- -UGGG---------UCU----UUGGAUUACCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 89061 0.66 0.981128
Target:  5'- gACgCCAGGAACUcGGUGGCgGACa--- -3'
miRNA:   3'- -UG-GGUCUUUGGaUUACCGgCUGcugu -5'
24389 5' -52.5 NC_005264.1 + 90654 0.67 0.971076
Target:  5'- cGCgCGGAGACCgcAUuGCUGGCGGCu -3'
miRNA:   3'- -UGgGUCUUUGGauUAcCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 91784 0.69 0.924507
Target:  5'- cACCCgcgcaggGGAAACaaUGAUGGCCGAC-ACAa -3'
miRNA:   3'- -UGGG-------UCUUUGg-AUUACCGGCUGcUGU- -5'
24389 5' -52.5 NC_005264.1 + 94131 0.68 0.953733
Target:  5'- cGCUCAGAAcugGCCUAAUGGaCUG-CGAg- -3'
miRNA:   3'- -UGGGUCUU---UGGAUUACC-GGCuGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.