miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 743 0.66 0.985042
Target:  5'- uCCUAGcAGCUUAAUGGUCuuCGGCGg -3'
miRNA:   3'- uGGGUCuUUGGAUUACCGGcuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 2367 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 2988 0.66 0.983171
Target:  5'- aAUCCAucGAGcGCCgacugGGCCGGCGGCu -3'
miRNA:   3'- -UGGGU--CUU-UGGauua-CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 4019 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 4269 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 6586 0.69 0.925061
Target:  5'- cCCCAGggGCCgacaGGUCaACGGCGa -3'
miRNA:   3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 10502 0.66 0.985042
Target:  5'- uCCCcGAuuGCCUGAgcGUCGACGACGu -3'
miRNA:   3'- uGGGuCUu-UGGAUUacCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 11879 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 13134 0.69 0.929931
Target:  5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3'
miRNA:   3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 15987 0.68 0.944706
Target:  5'- gACCCGGGgagauuuAGCCgcaucAUGGCaGGCGACGa -3'
miRNA:   3'- -UGGGUCU-------UUGGau---UACCGgCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 30391 0.66 0.983171
Target:  5'- uUCCAGAAagGCCUugacGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUU--UGGAuuacCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 33190 0.66 0.984862
Target:  5'- aACgCAGAGcuauuacGCUUAA-GGCUGGCGGCGc -3'
miRNA:   3'- -UGgGUCUU-------UGGAUUaCCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 37177 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 37802 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 38647 0.8 0.408613
Target:  5'- uCCCGGAAACCgucgagaUGAUGGCCG-CGGCGg -3'
miRNA:   3'- uGGGUCUUUGG-------AUUACCGGCuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 39359 0.67 0.96774
Target:  5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3'
miRNA:   3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 42774 0.67 0.961351
Target:  5'- gACCCGGGuGGCC-AGUuacGGCCGGCGGa- -3'
miRNA:   3'- -UGGGUCU-UUGGaUUA---CCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 44204 0.73 0.749862
Target:  5'- -aCCAuuGACCUAAcuUGGCCGGCGAgGg -3'
miRNA:   3'- ugGGUcuUUGGAUU--ACCGGCUGCUgU- -5'
24389 5' -52.5 NC_005264.1 + 46058 0.67 0.973887
Target:  5'- cCCCGGAAGCCauucuGUGGUauaaaagcggGACGGCGg -3'
miRNA:   3'- uGGGUCUUUGGau---UACCGg---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 46622 0.68 0.953733
Target:  5'- gUCguGGGACCgcGUGGCCGAagaauuCGGCAu -3'
miRNA:   3'- uGGguCUUUGGauUACCGGCU------GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.