miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 119252 0.97 0.037731
Target:  5'- uACCCAaGAACCUAAUGGCCGACGACAc -3'
miRNA:   3'- -UGGGUcUUUGGAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 38647 0.8 0.408613
Target:  5'- uCCCGGAAACCgucgagaUGAUGGCCG-CGGCGg -3'
miRNA:   3'- uGGGUCUUUGG-------AUUACCGGCuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 76011 0.77 0.5335
Target:  5'- cCCUAGaAGAUCUGAagucGGCCGACGACAg -3'
miRNA:   3'- uGGGUC-UUUGGAUUa---CCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 44204 0.73 0.749862
Target:  5'- -aCCAuuGACCUAAcuUGGCCGGCGAgGg -3'
miRNA:   3'- ugGGUcuUUGGAUU--ACCGGCUGCUgU- -5'
24389 5' -52.5 NC_005264.1 + 37802 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 156828 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 109383 0.72 0.778913
Target:  5'- gGCCgucGGAACCUGuucuUGGCCGACGuGCAa -3'
miRNA:   3'- -UGGgu-CUUUGGAUu---ACCGGCUGC-UGU- -5'
24389 5' -52.5 NC_005264.1 + 85077 0.72 0.778913
Target:  5'- cCCCAGGuccGCCgcaccguuugUGGUGGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUu--UGG----------AUUACCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 108467 0.72 0.778913
Target:  5'- cGCgCGGGGAUCcGGUGGCCGcGCGACGc -3'
miRNA:   3'- -UGgGUCUUUGGaUUACCGGC-UGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 122656 0.72 0.788334
Target:  5'- uACCCAuacACCUAcuuUGGCCuGGCGACAg -3'
miRNA:   3'- -UGGGUcuuUGGAUu--ACCGG-CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 146062 0.72 0.806727
Target:  5'- gGCCaCAGAGACC-----GCCGGCGACGa -3'
miRNA:   3'- -UGG-GUCUUUGGauuacCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 4019 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 123046 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 86145 0.71 0.841458
Target:  5'- aGCCUcgucacgguGGGcgacAGCCUGGUGGCCGugGAa- -3'
miRNA:   3'- -UGGG---------UCU----UUGGAUUACCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 155425 0.71 0.857663
Target:  5'- cACCCGGcgcacGAACC-AAUGGaCGACGGCGc -3'
miRNA:   3'- -UGGGUC-----UUUGGaUUACCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 123296 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 4269 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 37177 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 156204 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 53317 0.7 0.900977
Target:  5'- uGCCCAGggGCUgcuUGGCCaGCaggGGCAg -3'
miRNA:   3'- -UGGGUCuuUGGauuACCGGcUG---CUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.