miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 106900 0.68 0.957659
Target:  5'- aGCCgAGAAACUacugccgcGGCUGACGAUAu -3'
miRNA:   3'- -UGGgUCUUUGGauua----CCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 68324 0.69 0.93046
Target:  5'- uGCCCuc---CCacGUGGCCGACGGCu -3'
miRNA:   3'- -UGGGucuuuGGauUACCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 135536 0.68 0.935608
Target:  5'- uGCUCGGGGACCUAG-GGaCCG-CGAUg -3'
miRNA:   3'- -UGGGUCUUUGGAUUaCC-GGCuGCUGu -5'
24389 5' -52.5 NC_005264.1 + 47134 0.68 0.940508
Target:  5'- -gCCGGAuGACUUGGUGGCgaUGAUGGCAg -3'
miRNA:   3'- ugGGUCU-UUGGAUUACCG--GCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 99638 0.68 0.940508
Target:  5'- gACCCGGAGACggc--GGCCGugG-CAg -3'
miRNA:   3'- -UGGGUCUUUGgauuaCCGGCugCuGU- -5'
24389 5' -52.5 NC_005264.1 + 15987 0.68 0.944706
Target:  5'- gACCCGGGgagauuuAGCCgcaucAUGGCaGGCGACGa -3'
miRNA:   3'- -UGGGUCU-------UUGGau---UACCGgCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 79892 0.68 0.948271
Target:  5'- gGCUCAG--GCCUGgucuuugcgugcgcGUGGCCGACGuCu -3'
miRNA:   3'- -UGGGUCuuUGGAU--------------UACCGGCUGCuGu -5'
24389 5' -52.5 NC_005264.1 + 80778 0.68 0.949568
Target:  5'- cGCgCAGAGAUCUGGccUGGCCGuagccauCGAUAc -3'
miRNA:   3'- -UGgGUCUUUGGAUU--ACCGGCu------GCUGU- -5'
24389 5' -52.5 NC_005264.1 + 94131 0.68 0.953733
Target:  5'- cGCUCAGAAcugGCCUAAUGGaCUG-CGAg- -3'
miRNA:   3'- -UGGGUCUU---UGGAUUACC-GGCuGCUgu -5'
24389 5' -52.5 NC_005264.1 + 132161 0.69 0.929931
Target:  5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3'
miRNA:   3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 125613 0.69 0.925061
Target:  5'- cCCCAGggGCCgacaGGUCaACGGCGa -3'
miRNA:   3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 78188 0.69 0.913514
Target:  5'- uGCCCGGaAAGCCgGAUGcGCgGAgCGGCAu -3'
miRNA:   3'- -UGGGUC-UUUGGaUUAC-CGgCU-GCUGU- -5'
24389 5' -52.5 NC_005264.1 + 44204 0.73 0.749862
Target:  5'- -aCCAuuGACCUAAcuUGGCCGGCGAgGg -3'
miRNA:   3'- ugGGUcuUUGGAUU--ACCGGCUGCUgU- -5'
24389 5' -52.5 NC_005264.1 + 156828 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 85077 0.72 0.778913
Target:  5'- cCCCAGGuccGCCgcaccguuugUGGUGGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUu--UGG----------AUUACCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 146062 0.72 0.806727
Target:  5'- gGCCaCAGAGACC-----GCCGGCGACGa -3'
miRNA:   3'- -UGG-GUCUUUGGauuacCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 86145 0.71 0.841458
Target:  5'- aGCCUcgucacgguGGGcgacAGCCUGGUGGCCGugGAa- -3'
miRNA:   3'- -UGGG---------UCU----UUGGAUUACCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 123046 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 123296 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 156204 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.