Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24389 | 5' | -52.5 | NC_005264.1 | + | 156828 | 0.73 | 0.76839 |
Target: 5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3' miRNA: 3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 85077 | 0.72 | 0.778913 |
Target: 5'- cCCCAGGuccGCCgcaccguuugUGGUGGCCGGCGAg- -3' miRNA: 3'- uGGGUCUu--UGG----------AUUACCGGCUGCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 146062 | 0.72 | 0.806727 |
Target: 5'- gGCCaCAGAGACC-----GCCGGCGACGa -3' miRNA: 3'- -UGG-GUCUUUGGauuacCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 86145 | 0.71 | 0.841458 |
Target: 5'- aGCCUcgucacgguGGGcgacAGCCUGGUGGCCGugGAa- -3' miRNA: 3'- -UGGG---------UCU----UUGGAUUACCGGCugCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 123046 | 0.71 | 0.841458 |
Target: 5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3' miRNA: 3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 123296 | 0.71 | 0.865449 |
Target: 5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3' miRNA: 3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 156204 | 0.7 | 0.880357 |
Target: 5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3' miRNA: 3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 99638 | 0.68 | 0.940508 |
Target: 5'- gACCCGGAGACggc--GGCCGugG-CAg -3' miRNA: 3'- -UGGGUCUUUGgauuaCCGGCugCuGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 47134 | 0.68 | 0.940508 |
Target: 5'- -gCCGGAuGACUUGGUGGCgaUGAUGGCAg -3' miRNA: 3'- ugGGUCU-UUGGAUUACCG--GCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 135536 | 0.68 | 0.935608 |
Target: 5'- uGCUCGGGGACCUAG-GGaCCG-CGAUg -3' miRNA: 3'- -UGGGUCUUUGGAUUaCC-GGCuGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 68324 | 0.69 | 0.93046 |
Target: 5'- uGCCCuc---CCacGUGGCCGACGGCu -3' miRNA: 3'- -UGGGucuuuGGauUACCGGCUGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 132161 | 0.69 | 0.929931 |
Target: 5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3' miRNA: 3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 125613 | 0.69 | 0.925061 |
Target: 5'- cCCCAGggGCCgacaGGUCaACGGCGa -3' miRNA: 3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 78188 | 0.69 | 0.913514 |
Target: 5'- uGCCCGGaAAGCCgGAUGcGCgGAgCGGCAu -3' miRNA: 3'- -UGGGUC-UUUGGaUUAC-CGgCU-GCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 2367 | 0.66 | 0.976494 |
Target: 5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3' miRNA: 3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 11879 | 0.66 | 0.976494 |
Target: 5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3' miRNA: 3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 89061 | 0.66 | 0.981128 |
Target: 5'- gACgCCAGGAACUcGGUGGCgGACa--- -3' miRNA: 3'- -UG-GGUCUUUGGaUUACCGgCUGcugu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 80221 | 0.66 | 0.981128 |
Target: 5'- -gUgAGAAGCUUG--GGCCGugGACGg -3' miRNA: 3'- ugGgUCUUUGGAUuaCCGGCugCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 54167 | 0.66 | 0.983171 |
Target: 5'- gUgCGGAAACCgcgcccUGGCCgggaGACGACAc -3' miRNA: 3'- uGgGUCUUUGGauu---ACCGG----CUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 119252 | 0.97 | 0.037731 |
Target: 5'- uACCCAaGAACCUAAUGGCCGACGACAc -3' miRNA: 3'- -UGGGUcUUUGGAUUACCGGCUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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