Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24392 | 3' | -58.1 | NC_005264.1 | + | 118248 | 1.08 | 0.002123 |
Target: 5'- aACAAGGACCCUAGCGCAGAGCUGGCGu -3' miRNA: 3'- -UGUUCCUGGGAUCGCGUCUCGACCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 133267 | 0.75 | 0.317836 |
Target: 5'- -aAAGGACgC-AGCGaCGGGGCUGGCGa -3' miRNA: 3'- ugUUCCUGgGaUCGC-GUCUCGACCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 3811 | 0.72 | 0.466795 |
Target: 5'- uGCGAGGAggugcuCCCUGcGCGCGGAGaccugcucCUGGCa -3' miRNA: 3'- -UGUUCCU------GGGAU-CGCGUCUC--------GACCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 69577 | 0.7 | 0.563476 |
Target: 5'- aGCcGGGGCCCUGGCGCcaccuAGcccgcuuGCUGGUa -3' miRNA: 3'- -UGuUCCUGGGAUCGCG-----UCu------CGACCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 91408 | 0.7 | 0.593645 |
Target: 5'- ----uGGCCCUAGCGcCGGGGCaccGGCGg -3' miRNA: 3'- uguucCUGGGAUCGC-GUCUCGa--CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 124966 | 0.7 | 0.593645 |
Target: 5'- gGCucGGAacCCCUcGCGCAGGGCagcGGCGc -3' miRNA: 3'- -UGuuCCU--GGGAuCGCGUCUCGa--CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 5940 | 0.7 | 0.593645 |
Target: 5'- gGCucGGAacCCCUcGCGCAGGGCagcGGCGc -3' miRNA: 3'- -UGuuCCU--GGGAuCGCGUCUCGa--CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 131706 | 0.7 | 0.603766 |
Target: 5'- aGCGuGGGCCU--GCGCGGcguuGCUGGCGc -3' miRNA: 3'- -UGUuCCUGGGauCGCGUCu---CGACCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 34297 | 0.69 | 0.634223 |
Target: 5'- uCGAGGGCCCcucgagGGCGCcgcgccuGAcGCUGGCu -3' miRNA: 3'- uGUUCCUGGGa-----UCGCGu------CU-CGACCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 153324 | 0.69 | 0.634223 |
Target: 5'- uCGAGGGCCCcucgagGGCGCcgcgccuGAcGCUGGCu -3' miRNA: 3'- uGUUCCUGGGa-----UCGCGu------CU-CGACCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 47235 | 0.69 | 0.644383 |
Target: 5'- ---cGGAgcUCUUGGCGCAGAGCaGGCc -3' miRNA: 3'- uguuCCU--GGGAUCGCGUCUCGaCCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 98097 | 0.69 | 0.654533 |
Target: 5'- uCAGGGcgAUCCUuGCGCGGGGCacGGCGc -3' miRNA: 3'- uGUUCC--UGGGAuCGCGUCUCGa-CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 84055 | 0.69 | 0.661627 |
Target: 5'- uCGAGGAauaaccacaccgccCCCUGGCucauGCGGAGCagcgGGCGc -3' miRNA: 3'- uGUUCCU--------------GGGAUCG----CGUCUCGa---CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 52201 | 0.69 | 0.673762 |
Target: 5'- -uGAGGGCCgUggGGCGCGguggcgcGAGCUGGUa -3' miRNA: 3'- ugUUCCUGGgA--UCGCGU-------CUCGACCGc -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 55123 | 0.68 | 0.684843 |
Target: 5'- cACGAGGGuucgacacCCCgccguGCGCuGuGCUGGCGc -3' miRNA: 3'- -UGUUCCU--------GGGau---CGCGuCuCGACCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 145994 | 0.68 | 0.694872 |
Target: 5'- aACGAGGGCCuCUAcggcguGCGCGuuauGGGCUcgGGCGa -3' miRNA: 3'- -UGUUCCUGG-GAU------CGCGU----CUCGA--CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 45756 | 0.68 | 0.694872 |
Target: 5'- uGCcauAGGACCCcuGCGCGGGGC-GcGCGg -3' miRNA: 3'- -UGu--UCCUGGGauCGCGUCUCGaC-CGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 38336 | 0.68 | 0.714766 |
Target: 5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3' miRNA: 3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 157363 | 0.68 | 0.714766 |
Target: 5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3' miRNA: 3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5' |
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24392 | 3' | -58.1 | NC_005264.1 | + | 43221 | 0.67 | 0.744064 |
Target: 5'- -gGGGGGCUac-G-GCGGGGCUGGCGg -3' miRNA: 3'- ugUUCCUGGgauCgCGUCUCGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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