miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 3' -58.1 NC_005264.1 + 3687 0.66 0.79981
Target:  5'- ---cGGGgCCUGGCGCGGAaagGGCGc -3'
miRNA:   3'- uguuCCUgGGAUCGCGUCUcgaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 3811 0.72 0.466795
Target:  5'- uGCGAGGAggugcuCCCUGcGCGCGGAGaccugcucCUGGCa -3'
miRNA:   3'- -UGUUCCU------GGGAU-CGCGUCUC--------GACCGc -5'
24392 3' -58.1 NC_005264.1 + 4671 0.66 0.834105
Target:  5'- uCAGGGAauaCCU-GCGuCGGGGCgagUGGCGc -3'
miRNA:   3'- uGUUCCUg--GGAuCGC-GUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 5287 0.66 0.817289
Target:  5'- gGCGGGGcggcggcugACCCgUGGgGCGGGcGaCUGGCGg -3'
miRNA:   3'- -UGUUCC---------UGGG-AUCgCGUCU-C-GACCGC- -5'
24392 3' -58.1 NC_005264.1 + 5940 0.7 0.593645
Target:  5'- gGCucGGAacCCCUcGCGCAGGGCagcGGCGc -3'
miRNA:   3'- -UGuuCCU--GGGAuCGCGUCUCGa--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 6666 0.66 0.808628
Target:  5'- gGCAGaGAUCCUGGCGCcAGcAGCgaGGCc -3'
miRNA:   3'- -UGUUcCUGGGAUCGCG-UC-UCGa-CCGc -5'
24392 3' -58.1 NC_005264.1 + 26163 0.66 0.79892
Target:  5'- gGCGAGGACUUUcgcGGCacugucgGCGGGGCcguUGGCGc -3'
miRNA:   3'- -UGUUCCUGGGA---UCG-------CGUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 26627 0.66 0.807753
Target:  5'- -gAAGGuuaaccuuauagaACCUUAGCGCGGcGCcGGCGc -3'
miRNA:   3'- ugUUCC-------------UGGGAUCGCGUCuCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 29476 0.67 0.781734
Target:  5'- -gGGGGGCggugcAGCGCAGGGCUaGGCa -3'
miRNA:   3'- ugUUCCUGgga--UCGCGUCUCGA-CCGc -5'
24392 3' -58.1 NC_005264.1 + 34297 0.69 0.634223
Target:  5'- uCGAGGGCCCcucgagGGCGCcgcgccuGAcGCUGGCu -3'
miRNA:   3'- uGUUCCUGGGa-----UCGCGu------CU-CGACCGc -5'
24392 3' -58.1 NC_005264.1 + 36640 0.66 0.834105
Target:  5'- gACGGGGaACCCgacccguGCGCGGAuggacCUGGCc -3'
miRNA:   3'- -UGUUCC-UGGGau-----CGCGUCUc----GACCGc -5'
24392 3' -58.1 NC_005264.1 + 37781 0.66 0.817289
Target:  5'- uCAAGGACUCgaggcgAGCgGCGGAGaagaGGCGc -3'
miRNA:   3'- uGUUCCUGGGa-----UCG-CGUCUCga--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 38336 0.68 0.714766
Target:  5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3'
miRNA:   3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5'
24392 3' -58.1 NC_005264.1 + 40051 0.66 0.79981
Target:  5'- cCAAGGGCCCgcAGCGCcccGGC-GGCa -3'
miRNA:   3'- uGUUCCUGGGa-UCGCGuc-UCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 42294 0.66 0.834105
Target:  5'- cGCGGGGcCCCaaaaaacGGCGCAGccAGC-GGCGu -3'
miRNA:   3'- -UGUUCCuGGGa------UCGCGUC--UCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 43221 0.67 0.744064
Target:  5'- -gGGGGGCUac-G-GCGGGGCUGGCGg -3'
miRNA:   3'- ugUUCCUGGgauCgCGUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 45756 0.68 0.694872
Target:  5'- uGCcauAGGACCCcuGCGCGGGGC-GcGCGg -3'
miRNA:   3'- -UGu--UCCUGGGauCGCGUCUCGaC-CGC- -5'
24392 3' -58.1 NC_005264.1 + 47235 0.69 0.644383
Target:  5'- ---cGGAgcUCUUGGCGCAGAGCaGGCc -3'
miRNA:   3'- uguuCCU--GGGAUCGCGUCUCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 52201 0.69 0.673762
Target:  5'- -uGAGGGCCgUggGGCGCGguggcgcGAGCUGGUa -3'
miRNA:   3'- ugUUCCUGGgA--UCGCGU-------CUCGACCGc -5'
24392 3' -58.1 NC_005264.1 + 55123 0.68 0.684843
Target:  5'- cACGAGGGuucgacacCCCgccguGCGCuGuGCUGGCGc -3'
miRNA:   3'- -UGUUCCU--------GGGau---CGCGuCuCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.