miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 22313 0.67 0.880951
Target:  5'- -gCGCCucagacaaccucGACCCGAcaaCCACUAGcGAACCUc -3'
miRNA:   3'- caGCGG------------UUGGGCU---GGUGGUU-CUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 26040 0.67 0.873788
Target:  5'- -cCGCCAgcuuuguccGCCCGGCCACgcgccgaAAGGACUc -3'
miRNA:   3'- caGCGGU---------UGGGCUGGUGg------UUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 26263 0.66 0.919147
Target:  5'- cUCuaCGACCCGcucuucgacGCCACCGAGGaagacGCCg -3'
miRNA:   3'- cAGcgGUUGGGC---------UGGUGGUUCU-----UGGa -5'
24392 5' -55.5 NC_005264.1 + 26903 0.69 0.791296
Target:  5'- cUCGCC--CCCGGCCGCCugu-GCCa -3'
miRNA:   3'- cAGCGGuuGGGCUGGUGGuucuUGGa -5'
24392 5' -55.5 NC_005264.1 + 27525 0.66 0.929991
Target:  5'- gGUCGCCGuaACCCucaguccgugGugCAuCCGAGGAUCg -3'
miRNA:   3'- -CAGCGGU--UGGG----------CugGU-GGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 30846 0.67 0.901095
Target:  5'- -gCGCCGgucgGCCC-ACCGCCAccGGCCUg -3'
miRNA:   3'- caGCGGU----UGGGcUGGUGGUucUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 36050 0.72 0.643698
Target:  5'- cUCGCuCAguGCCCGACUGCCGacgcggAGAGCCc -3'
miRNA:   3'- cAGCG-GU--UGGGCUGGUGGU------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 36565 0.68 0.866408
Target:  5'- -gCGCCGACCU--CCGCCAAGu-CCUc -3'
miRNA:   3'- caGCGGUUGGGcuGGUGGUUCuuGGA- -5'
24392 5' -55.5 NC_005264.1 + 36648 0.69 0.826469
Target:  5'- -aC-CCGACCCGugCGCgGAuGGACCUg -3'
miRNA:   3'- caGcGGUUGGGCugGUGgUU-CUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 36992 0.66 0.917438
Target:  5'- aGUCGCCGccgccuccggcaacACCCuGACCGuCCccucuGAGCCg -3'
miRNA:   3'- -CAGCGGU--------------UGGG-CUGGU-GGuu---CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 37710 0.71 0.714642
Target:  5'- cGUUGCgCAGCCaGAgCACgAAGAACCUa -3'
miRNA:   3'- -CAGCG-GUUGGgCUgGUGgUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 38199 0.68 0.858817
Target:  5'- cGUCGCgCGGCCCGAuagcggcuccggUCGCCGAucuggaggaacuGAGCCa -3'
miRNA:   3'- -CAGCG-GUUGGGCU------------GGUGGUU------------CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 39915 0.7 0.753828
Target:  5'- aGUCGCCGuguagccagagaACUCGACC-CCGgguGGGGCCa -3'
miRNA:   3'- -CAGCGGU------------UGGGCUGGuGGU---UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 40124 0.69 0.817921
Target:  5'- aUCGCCGuccuCCuCGucucGCCGCCGAGAcgGCCg -3'
miRNA:   3'- cAGCGGUu---GG-GC----UGGUGGUUCU--UGGa -5'
24392 5' -55.5 NC_005264.1 + 42114 0.73 0.582399
Target:  5'- aGUCGCCGgcaccguccuccGCCCGACCGCCGGcuuugucggcgcGAgGCCUu -3'
miRNA:   3'- -CAGCGGU------------UGGGCUGGUGGUU------------CU-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 42512 0.7 0.753828
Target:  5'- aUCGCCGuacaucGCCCGACuCACCuAGucccACCUa -3'
miRNA:   3'- cAGCGGU------UGGGCUG-GUGGuUCu---UGGA- -5'
24392 5' -55.5 NC_005264.1 + 43677 0.67 0.901095
Target:  5'- -gCGCCGGCguuaaggCGGCCGCCGGGGAgCg -3'
miRNA:   3'- caGCGGUUGg------GCUGGUGGUUCUUgGa -5'
24392 5' -55.5 NC_005264.1 + 45869 0.7 0.763379
Target:  5'- -cCGCCAuaguaguCUCGGCCGCCAcGAACUUc -3'
miRNA:   3'- caGCGGUu------GGGCUGGUGGUuCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 48401 0.68 0.851021
Target:  5'- uUCGUCGAggCGACgGCCGAGAGCUUu -3'
miRNA:   3'- cAGCGGUUggGCUGgUGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 51066 0.66 0.929991
Target:  5'- cGUCGCCu-CuaGGCCGCCuAG-ACCUg -3'
miRNA:   3'- -CAGCGGuuGggCUGGUGGuUCuUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.