miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 2386 0.66 0.929991
Target:  5'- cGUCGCCcgcaggAGCCCGGC-GCCGGccuGCCUa -3'
miRNA:   3'- -CAGCGG------UUGGGCUGgUGGUUcu-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 2789 0.69 0.826469
Target:  5'- aGUgGUCGGCCCucGACCGCUgccuGGGAGCCc -3'
miRNA:   3'- -CAgCGGUUGGG--CUGGUGG----UUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 2964 0.66 0.935054
Target:  5'- cUCGCCGGCauaguuCCGACCACgaauccauCGAGcGCCg -3'
miRNA:   3'- cAGCGGUUG------GGCUGGUG--------GUUCuUGGa -5'
24392 5' -55.5 NC_005264.1 + 3073 0.71 0.714642
Target:  5'- cUCGCCGcgACUggCGGCgGCCGAGGACCc -3'
miRNA:   3'- cAGCGGU--UGG--GCUGgUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 4005 0.69 0.826469
Target:  5'- -aUGCCucCUCGcCCACCAGGGGCUUg -3'
miRNA:   3'- caGCGGuuGGGCuGGUGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 4256 0.66 0.913366
Target:  5'- aGUC-CCGGCuuG-CCGCgCGGGAACCg -3'
miRNA:   3'- -CAGcGGUUGggCuGGUG-GUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 4739 0.67 0.880951
Target:  5'- -cCGCCGAgCCGGCguCCGGGGguggACCg -3'
miRNA:   3'- caGCGGUUgGGCUGguGGUUCU----UGGa -5'
24392 5' -55.5 NC_005264.1 + 6480 0.7 0.772814
Target:  5'- -aCGUCGggguGCgCGGCCAUCGAGGGCCg -3'
miRNA:   3'- caGCGGU----UGgGCUGGUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 6834 0.66 0.935054
Target:  5'- cGUCGCCGggcguACCUuGCUgguuGCCGGGAACUa -3'
miRNA:   3'- -CAGCGGU-----UGGGcUGG----UGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 9060 0.67 0.880951
Target:  5'- cGUUGagGACCCGACgCGCUGAGGACg- -3'
miRNA:   3'- -CAGCggUUGGGCUG-GUGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 11854 0.66 0.913366
Target:  5'- -aCG-CGGCCCGucGCCGCCAcucgcgagcucAGAGCCg -3'
miRNA:   3'- caGCgGUUGGGC--UGGUGGU-----------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 12874 0.67 0.893948
Target:  5'- gGUCGCCGAUgaCGACCcggacggACCGucGAGCCg -3'
miRNA:   3'- -CAGCGGUUGg-GCUGG-------UGGUu-CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 14398 0.72 0.664141
Target:  5'- -gCGCCGGCuguuCUGACCACCAGGcauuGCCg -3'
miRNA:   3'- caGCGGUUG----GGCUGGUGGUUCu---UGGa -5'
24392 5' -55.5 NC_005264.1 + 15900 0.69 0.817921
Target:  5'- aUCGCCG--CCGACCGgCAGGGACg- -3'
miRNA:   3'- cAGCGGUugGGCUGGUgGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 16426 0.67 0.887893
Target:  5'- --gGCC-GCUCGACUGCCGcGGGGCCUg -3'
miRNA:   3'- cagCGGuUGGGCUGGUGGU-UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 16734 0.67 0.894609
Target:  5'- -gCGCacgAACCCGAaugcguaguCCACCAAGAcCCg -3'
miRNA:   3'- caGCGg--UUGGGCU---------GGUGGUUCUuGGa -5'
24392 5' -55.5 NC_005264.1 + 16926 0.71 0.684481
Target:  5'- -gCGCUGACCCG-CCGCC-GGAGCUg -3'
miRNA:   3'- caGCGGUUGGGCuGGUGGuUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 17035 0.8 0.267826
Target:  5'- cGUCGCCAGCagcgCGGCCGCUAAGAGCa- -3'
miRNA:   3'- -CAGCGGUUGg---GCUGGUGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 17776 0.68 0.83484
Target:  5'- -cUGcCCGGCCCGGCUucuagagcGCCAAGGuACCUg -3'
miRNA:   3'- caGC-GGUUGGGCUGG--------UGGUUCU-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 21086 0.68 0.83484
Target:  5'- -aUGCCGugCUcGCCuCCGAGGGCCUg -3'
miRNA:   3'- caGCGGUugGGcUGGuGGUUCUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.