miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 21086 0.68 0.83484
Target:  5'- -aUGCCGugCUcGCCuCCGAGGGCCUg -3'
miRNA:   3'- caGCGGUugGGcUGGuGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 161539 0.7 0.753828
Target:  5'- aUCGCCGuacaucGCCCGACuCACCuAGucccACCUa -3'
miRNA:   3'- cAGCGGU------UGGGCUG-GUGGuUCu---UGGA- -5'
24392 5' -55.5 NC_005264.1 + 45869 0.7 0.763379
Target:  5'- -cCGCCAuaguaguCUCGGCCGCCAcGAACUUc -3'
miRNA:   3'- caGCGGUu------GGGCUGGUGGUuCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 125507 0.7 0.772814
Target:  5'- -aCGUCGggguGCgCGGCCAUCGAGGGCCg -3'
miRNA:   3'- caGCGGU----UGgGCUGGUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 158941 0.69 0.808323
Target:  5'- aGUCGCCcguguagccagagAACUCGACC-CCGgguGGGGCCa -3'
miRNA:   3'- -CAGCGG-------------UUGGGCUGGuGGU---UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 159151 0.69 0.817921
Target:  5'- aUCGCCGuccuCCuCGucucGCCGCCGAGAcgGCCg -3'
miRNA:   3'- cAGCGGUu---GG-GC----UGGUGGUUCU--UGGa -5'
24392 5' -55.5 NC_005264.1 + 121815 0.69 0.826469
Target:  5'- aGUgGUCGGCCCucGACCGCUgccuGGGAGCCc -3'
miRNA:   3'- -CAgCGGUUGGG--CUGGUGG----UUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 123032 0.69 0.826469
Target:  5'- -aUGCCucCUCGcCCACCAGGGGCUUg -3'
miRNA:   3'- caGCGGuuGGGCuGGUGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 17776 0.68 0.83484
Target:  5'- -cUGcCCGGCCCGGCUucuagagcGCCAAGGuACCUg -3'
miRNA:   3'- caGC-GGUUGGGCUGG--------UGGUUCU-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 137245 0.7 0.734413
Target:  5'- -aCGCCGGCCCGGCgCuauucauuugGCCAuGGGCCa -3'
miRNA:   3'- caGCGGUUGGGCUG-G----------UGGUuCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 86015 0.7 0.724568
Target:  5'- --gGCCAucaggaauuucaACgaGGCCGCCAGGAACCUg -3'
miRNA:   3'- cagCGGU------------UGggCUGGUGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 122100 0.71 0.714642
Target:  5'- cUCGCCGcgACUggCGGCgGCCGAGGACCc -3'
miRNA:   3'- cAGCGGU--UGG--GCUGgUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 144834 0.78 0.315324
Target:  5'- --gGCCGACCCG-CCGCCGucAGAGCCg -3'
miRNA:   3'- cagCGGUUGGGCuGGUGGU--UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 80947 0.74 0.552135
Target:  5'- cUCGCCcGCCCaucGCCGCCAAGGcGCCa -3'
miRNA:   3'- cAGCGGuUGGGc--UGGUGGUUCU-UGGa -5'
24392 5' -55.5 NC_005264.1 + 42114 0.73 0.582399
Target:  5'- aGUCGCCGgcaccguccuccGCCCGACCGCCGGcuuugucggcgcGAgGCCUu -3'
miRNA:   3'- -CAGCGGU------------UGGGCUGGUGGUU------------CU-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 78045 0.73 0.582399
Target:  5'- -gCGCCAugCCcugccucgaauGACgACCAAGAGCCg -3'
miRNA:   3'- caGCGGUugGG-----------CUGgUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 61691 0.72 0.623218
Target:  5'- cUCGCacagugccuuCAGCuuGACCACCGAGAuGCCg -3'
miRNA:   3'- cAGCG----------GUUGggCUGGUGGUUCU-UGGa -5'
24392 5' -55.5 NC_005264.1 + 155077 0.72 0.643698
Target:  5'- cUCGCuCAguGCCCGACUGCCGacgcggAGAGCCc -3'
miRNA:   3'- cAGCG-GU--UGGGCUGGUGGU------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 14398 0.72 0.664141
Target:  5'- -gCGCCGGCuguuCUGACCACCAGGcauuGCCg -3'
miRNA:   3'- caGCGGUUG----GGCUGGUGGUUCu---UGGa -5'
24392 5' -55.5 NC_005264.1 + 37710 0.71 0.714642
Target:  5'- cGUUGCgCAGCCaGAgCACgAAGAACCUa -3'
miRNA:   3'- -CAGCG-GUUGGgCUgGUGgUUCUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.