miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 118286 1.08 0.004044
Target:  5'- gGUCGCCAACCCGACCACCAAGAACCUg -3'
miRNA:   3'- -CAGCGGUUGGGCUGGUGGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 17035 0.8 0.267826
Target:  5'- cGUCGCCAGCagcgCGGCCGCUAAGAGCa- -3'
miRNA:   3'- -CAGCGGUUGg---GCUGGUGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 144834 0.78 0.315324
Target:  5'- --gGCCGACCCG-CCGCCGucAGAGCCg -3'
miRNA:   3'- cagCGGUUGGGCuGGUGGU--UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 140865 0.76 0.446435
Target:  5'- -gCGCCAGgCCGACUGCCAGGAaaugacagcugGCCUu -3'
miRNA:   3'- caGCGGUUgGGCUGGUGGUUCU-----------UGGA- -5'
24392 5' -55.5 NC_005264.1 + 130775 0.75 0.483684
Target:  5'- aGUgGCCAcgcuGCCCGACUAuCCAAGAggaGCCUc -3'
miRNA:   3'- -CAgCGGU----UGGGCUGGU-GGUUCU---UGGA- -5'
24392 5' -55.5 NC_005264.1 + 99815 0.74 0.506737
Target:  5'- gGUCGCCGACCCcgggguaaggcuggaGugCGCCAAGcacGCCUu -3'
miRNA:   3'- -CAGCGGUUGGG---------------CugGUGGUUCu--UGGA- -5'
24392 5' -55.5 NC_005264.1 + 81830 0.74 0.552135
Target:  5'- -cCGCUggUUCGACCACCAAGGcggagGCCa -3'
miRNA:   3'- caGCGGuuGGGCUGGUGGUUCU-----UGGa -5'
24392 5' -55.5 NC_005264.1 + 80947 0.74 0.552135
Target:  5'- cUCGCCcGCCCaucGCCGCCAAGGcGCCa -3'
miRNA:   3'- cAGCGGuUGGGc--UGGUGGUUCU-UGGa -5'
24392 5' -55.5 NC_005264.1 + 78045 0.73 0.582399
Target:  5'- -gCGCCAugCCcugccucgaauGACgACCAAGAGCCg -3'
miRNA:   3'- caGCGGUugGG-----------CUGgUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 42114 0.73 0.582399
Target:  5'- aGUCGCCGgcaccguccuccGCCCGACCGCCGGcuuugucggcgcGAgGCCUu -3'
miRNA:   3'- -CAGCGGU------------UGGGCUGGUGGUU------------CU-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 91949 0.72 0.612985
Target:  5'- -gCGgCAugCCGAUgACCAGGGGCCg -3'
miRNA:   3'- caGCgGUugGGCUGgUGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 61691 0.72 0.623218
Target:  5'- cUCGCacagugccuuCAGCuuGACCACCGAGAuGCCg -3'
miRNA:   3'- cAGCG----------GUUGggCUGGUGGUUCU-UGGa -5'
24392 5' -55.5 NC_005264.1 + 155077 0.72 0.643698
Target:  5'- cUCGCuCAguGCCCGACUGCCGacgcggAGAGCCc -3'
miRNA:   3'- cAGCG-GU--UGGGCUGGUGGU------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 36050 0.72 0.643698
Target:  5'- cUCGCuCAguGCCCGACUGCCGacgcggAGAGCCc -3'
miRNA:   3'- cAGCG-GU--UGGGCUGGUGGU------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 94293 0.72 0.653928
Target:  5'- gGUCGCCGAguauUUCGACC-CCGAGAcaaaGCCUg -3'
miRNA:   3'- -CAGCGGUU----GGGCUGGuGGUUCU----UGGA- -5'
24392 5' -55.5 NC_005264.1 + 14398 0.72 0.664141
Target:  5'- -gCGCCGGCuguuCUGACCACCAGGcauuGCCg -3'
miRNA:   3'- caGCGGUUG----GGCUGGUGGUUCu---UGGa -5'
24392 5' -55.5 NC_005264.1 + 136710 0.71 0.684481
Target:  5'- cUCGCCAuucuCUCGGCCcgcGCCAcGAGCCg -3'
miRNA:   3'- cAGCGGUu---GGGCUGG---UGGUuCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 16926 0.71 0.684481
Target:  5'- -gCGCUGACCCG-CCGCC-GGAGCUg -3'
miRNA:   3'- caGCGGUUGGGCuGGUGGuUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 136499 0.71 0.714642
Target:  5'- -aCGCCAACCCGACUccgGCCuGGAAg-- -3'
miRNA:   3'- caGCGGUUGGGCUGG---UGGuUCUUgga -5'
24392 5' -55.5 NC_005264.1 + 3073 0.71 0.714642
Target:  5'- cUCGCCGcgACUggCGGCgGCCGAGGACCc -3'
miRNA:   3'- cAGCGGU--UGG--GCUGgUGGUUCUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.