Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24394 | 3' | -65.9 | NC_005264.1 | + | 149660 | 0.68 | 0.366959 |
Target: 5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3' miRNA: 3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 5527 | 0.68 | 0.374488 |
Target: 5'- gACagCCGCgGCGUCUCGCGCGGagcGGGUUUc -3' miRNA: 3'- -UGa-GGCG-CGCGGGGCGCGUC---CCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 72201 | 0.68 | 0.374488 |
Target: 5'- uCUCCGCGCGCCCUuc---GGGGUUg -3' miRNA: 3'- uGAGGCGCGCGGGGcgcguCCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 48534 | 0.68 | 0.379821 |
Target: 5'- uUUCCGCGuCGUCCCGCGCGcccccgucgccuucGucGUCCg -3' miRNA: 3'- uGAGGCGC-GCGGGGCGCGU--------------CccCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 162063 | 0.68 | 0.382121 |
Target: 5'- cGCUaCCGCaagaacCGUgUCGCGUAGGGGcUCCg -3' miRNA: 3'- -UGA-GGCGc-----GCGgGGCGCGUCCCC-AGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 122572 | 0.68 | 0.382121 |
Target: 5'- -gUCaCGCaGCGCCgcaCCGCGUuGGGGUaCCg -3' miRNA: 3'- ugAG-GCG-CGCGG---GGCGCGuCCCCA-GG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 42898 | 0.68 | 0.382121 |
Target: 5'- uCUCCGaccuucccccCGCGgCCCGCGaCAcGGGG-CCg -3' miRNA: 3'- uGAGGC----------GCGCgGGGCGC-GU-CCCCaGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 127839 | 0.68 | 0.385203 |
Target: 5'- cCUCCGCgGCGgccggcggucuagaaCCCgGCGCGcgaauGGGGUCUc -3' miRNA: 3'- uGAGGCG-CGC---------------GGGgCGCGU-----CCCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 18410 | 0.68 | 0.389857 |
Target: 5'- gUUCCggccggcgcagGCGCGCCCUcucgcucgGCGC-GGGGUCg -3' miRNA: 3'- uGAGG-----------CGCGCGGGG--------CGCGuCCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 32301 | 0.68 | 0.397695 |
Target: 5'- cACgcgCCGCGaCGCUUCGCGCA--GGUCUa -3' miRNA: 3'- -UGa--GGCGC-GCGGGGCGCGUccCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 3821 | 0.68 | 0.397695 |
Target: 5'- uGCUCCcuGCGCGCggagaCCUGCuccugGCAuGGGUCCu -3' miRNA: 3'- -UGAGG--CGCGCG-----GGGCG-----CGUcCCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 100255 | 0.68 | 0.400858 |
Target: 5'- uACUUCGCGCGgucaauuuuaucgaUCCGCGCAGcGGGcUCg -3' miRNA: 3'- -UGAGGCGCGCg-------------GGGCGCGUC-CCC-AGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 149562 | 0.68 | 0.405633 |
Target: 5'- gACUcucCCGCGgacaGCCCCGgGCGGaGGGgggCUg -3' miRNA: 3'- -UGA---GGCGCg---CGGGGCgCGUC-CCCa--GG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 16152 | 0.67 | 0.419354 |
Target: 5'- -aUCuCGCGCagggcggcaaugccGCCCUGCGCGGaGGUCg -3' miRNA: 3'- ugAG-GCGCG--------------CGGGGCGCGUCcCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 143740 | 0.67 | 0.421804 |
Target: 5'- uCUCCGCGC-CgCCGCGguGcaGUCCu -3' miRNA: 3'- uGAGGCGCGcGgGGCGCguCccCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 62213 | 0.67 | 0.421804 |
Target: 5'- aACUUgaggGCGCGCUCCGCGgCcgcuucGGGGUCg -3' miRNA: 3'- -UGAGg---CGCGCGGGGCGC-Gu-----CCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 152968 | 0.67 | 0.421804 |
Target: 5'- gGCcgUgGCGCGCCgggaCCGCGCccgauAGGGG-CCg -3' miRNA: 3'- -UGa-GgCGCGCGG----GGCGCG-----UCCCCaGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 33941 | 0.67 | 0.421804 |
Target: 5'- gGCcgUgGCGCGCCgggaCCGCGCccgauAGGGG-CCg -3' miRNA: 3'- -UGa-GgCGCGCGG----GGCGCG-----UCCCCaGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 95979 | 0.67 | 0.445927 |
Target: 5'- uCUCCGCGCGCgaucuauuUUCGCGUcGGGcgacggcGUCCg -3' miRNA: 3'- uGAGGCGCGCG--------GGGCGCGuCCC-------CAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 141126 | 0.67 | 0.446773 |
Target: 5'- uACUCCuGCGCGCa-CG-GCcGGGGUCa -3' miRNA: 3'- -UGAGG-CGCGCGggGCgCGuCCCCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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