miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 37857 0.76 0.12098
Target:  5'- -aUCCGCGaaugcgccgcUGCCCUGCGCgAGGGGuUCCg -3'
miRNA:   3'- ugAGGCGC----------GCGGGGCGCG-UCCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 39467 0.67 0.446773
Target:  5'- uGCUgcgaCGCGCGCUcagCCGC-CAGGGGcaggCCu -3'
miRNA:   3'- -UGAg---GCGCGCGG---GGCGcGUCCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 40640 0.66 0.481299
Target:  5'- --cCCGCGcCGUCgCGaCGCGGaGGGUCg -3'
miRNA:   3'- ugaGGCGC-GCGGgGC-GCGUC-CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 42898 0.68 0.382121
Target:  5'- uCUCCGaccuucccccCGCGgCCCGCGaCAcGGGG-CCg -3'
miRNA:   3'- uGAGGC----------GCGCgGGGCGC-GU-CCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 48534 0.68 0.379821
Target:  5'- uUUCCGCGuCGUCCCGCGCGcccccgucgccuucGucGUCCg -3'
miRNA:   3'- uGAGGCGC-GCGGGGCGCGU--------------CccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 58121 0.71 0.244125
Target:  5'- cGCUgCUGCGCGaCCUCGCGCAGccGUCUg -3'
miRNA:   3'- -UGA-GGCGCGC-GGGGCGCGUCccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 60886 0.69 0.352216
Target:  5'- uCUCgGCGUaCgCCGCGguGGGG-CCg -3'
miRNA:   3'- uGAGgCGCGcGgGGCGCguCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 62213 0.67 0.421804
Target:  5'- aACUUgaggGCGCGCUCCGCGgCcgcuucGGGGUCg -3'
miRNA:   3'- -UGAGg---CGCGCGGGGCGC-Gu-----CCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 62998 0.69 0.319924
Target:  5'- gACUCCaagGCGUGCUUgGCGCAcuccagccuuaccccGGGGUCg -3'
miRNA:   3'- -UGAGG---CGCGCGGGgCGCGU---------------CCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 64527 0.72 0.213132
Target:  5'- -gUCCGCGC-CgCCGCGgAGGGGgguUCCg -3'
miRNA:   3'- ugAGGCGCGcGgGGCGCgUCCCC---AGG- -5'
24394 3' -65.9 NC_005264.1 + 64732 0.71 0.244125
Target:  5'- gGCUCgGCGCcguGCCCCGCGCAaGGaUCg -3'
miRNA:   3'- -UGAGgCGCG---CGGGGCGCGUcCCcAGg -5'
24394 3' -65.9 NC_005264.1 + 68441 0.67 0.455277
Target:  5'- -gUCCGCGCcgcgGUCUgCGCGCGGaGGGccUCCa -3'
miRNA:   3'- ugAGGCGCG----CGGG-GCGCGUC-CCC--AGG- -5'
24394 3' -65.9 NC_005264.1 + 69667 0.66 0.507121
Target:  5'- uGCUCCGCccagucuggagcgGCGCCCCGaCGguGacuGGGa-- -3'
miRNA:   3'- -UGAGGCG-------------CGCGGGGC-GCguC---CCCagg -5'
24394 3' -65.9 NC_005264.1 + 71427 0.72 0.218052
Target:  5'- gACUCCGCcgGUGCCCCgGCGCuAGGGccaaCCa -3'
miRNA:   3'- -UGAGGCG--CGCGGGG-CGCG-UCCCca--GG- -5'
24394 3' -65.9 NC_005264.1 + 72201 0.68 0.374488
Target:  5'- uCUCCGCGCGCCCUuc---GGGGUUg -3'
miRNA:   3'- uGAGGCGCGCGGGGcgcguCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 77066 0.66 0.508022
Target:  5'- aGCUUaacaGC-CCCCGCGCaaugucuuGGGGGUCUc -3'
miRNA:   3'- -UGAGgcg-CGcGGGGCGCG--------UCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 80324 0.71 0.272737
Target:  5'- -aUCCGUGCcagacaaugGCUCCGCGCGGgucGGGUCg -3'
miRNA:   3'- ugAGGCGCG---------CGGGGCGCGUC---CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 95979 0.67 0.445927
Target:  5'- uCUCCGCGCGCgaucuauuUUCGCGUcGGGcgacggcGUCCg -3'
miRNA:   3'- uGAGGCGCGCG--------GGGCGCGuCCC-------CAGG- -5'
24394 3' -65.9 NC_005264.1 + 97987 0.66 0.481299
Target:  5'- --aCUGCGa--CCCGCGCAccGGGGaUCCa -3'
miRNA:   3'- ugaGGCGCgcgGGGCGCGU--CCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 100255 0.68 0.400858
Target:  5'- uACUUCGCGCGgucaauuuuaucgaUCCGCGCAGcGGGcUCg -3'
miRNA:   3'- -UGAGGCGCGCg-------------GGGCGCGUC-CCC-AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.