miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 981 0.66 0.478664
Target:  5'- --aUCGCGCuaaaauaagcucuuGCCCCGCGCccguguggugGGGGGgcaggggCCg -3'
miRNA:   3'- ugaGGCGCG--------------CGGGGCGCG----------UCCCCa------GG- -5'
24394 3' -65.9 NC_005264.1 + 2498 0.67 0.455277
Target:  5'- -gUCgGCGgGCCUCGCGCgacuucagcgcgGGGGGcgacuUCCc -3'
miRNA:   3'- ugAGgCGCgCGGGGCGCG------------UCCCC-----AGG- -5'
24394 3' -65.9 NC_005264.1 + 3175 0.66 0.490133
Target:  5'- cCUCCGCGuCGCgaCgGCGCGGGGa--- -3'
miRNA:   3'- uGAGGCGC-GCGg-GgCGCGUCCCcagg -5'
24394 3' -65.9 NC_005264.1 + 3428 0.73 0.185581
Target:  5'- --gCgGCGCGCCCCacuuCuCAGGGGUCCg -3'
miRNA:   3'- ugaGgCGCGCGGGGc---GcGUCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 3577 0.66 0.498147
Target:  5'- cCUCCGCguaacgccaggagGCGCgaagaauuaCCGcCGCGGGGGgCCg -3'
miRNA:   3'- uGAGGCG-------------CGCGg--------GGC-GCGUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 3821 0.68 0.397695
Target:  5'- uGCUCCcuGCGCGCggagaCCUGCuccugGCAuGGGUCCu -3'
miRNA:   3'- -UGAGG--CGCGCG-----GGGCG-----CGUcCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 5527 0.68 0.374488
Target:  5'- gACagCCGCgGCGUCUCGCGCGGagcGGGUUUc -3'
miRNA:   3'- -UGa-GGCG-CGCGGGGCGCGUC---CCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 6140 0.72 0.205459
Target:  5'- gGCgagggCCGCGCGCCCguCGCGCAucgcgugcacgauguGGGGcacgCCg -3'
miRNA:   3'- -UGa----GGCGCGCGGG--GCGCGU---------------CCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 9325 0.69 0.324008
Target:  5'- gUUCCGUuCGuCCCCGC-CAGGGGcggCCg -3'
miRNA:   3'- uGAGGCGcGC-GGGGCGcGUCCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 11769 0.66 0.490133
Target:  5'- uCUCCGgGCGCCUgGCucGCAcuccGGGGcagCCc -3'
miRNA:   3'- uGAGGCgCGCGGGgCG--CGU----CCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 12139 0.72 0.228184
Target:  5'- cCUCCGCcgGCGCugCCCGuUGCuGGGGUCUc -3'
miRNA:   3'- uGAGGCG--CGCG--GGGC-GCGuCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 16152 0.67 0.419354
Target:  5'- -aUCuCGCGCagggcggcaaugccGCCCUGCGCGGaGGUCg -3'
miRNA:   3'- ugAG-GCGCG--------------CGGGGCGCGUCcCCAGg -5'
24394 3' -65.9 NC_005264.1 + 18410 0.68 0.389857
Target:  5'- gUUCCggccggcgcagGCGCGCCCUcucgcucgGCGC-GGGGUCg -3'
miRNA:   3'- uGAGG-----------CGCGCGGGG--------CGCGuCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 20262 0.71 0.266806
Target:  5'- --gCgGCGCgGCCUCGCGgAGGGGaCCg -3'
miRNA:   3'- ugaGgCGCG-CGGGGCGCgUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 21252 0.67 0.446773
Target:  5'- gGCUCgagUGUGCGCgCCGCGgAGGuGGUaacgCCa -3'
miRNA:   3'- -UGAG---GCGCGCGgGGCGCgUCC-CCA----GG- -5'
24394 3' -65.9 NC_005264.1 + 30633 0.68 0.366959
Target:  5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3'
miRNA:   3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5'
24394 3' -65.9 NC_005264.1 + 31231 0.66 0.51707
Target:  5'- uCUCCgcGCGCGCCCaCGCGCGccGcUCCc -3'
miRNA:   3'- uGAGG--CGCGCGGG-GCGCGUccCcAGG- -5'
24394 3' -65.9 NC_005264.1 + 32301 0.68 0.397695
Target:  5'- cACgcgCCGCGaCGCUUCGCGCA--GGUCUa -3'
miRNA:   3'- -UGa--GGCGC-GCGGGGCGCGUccCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 33941 0.67 0.421804
Target:  5'- gGCcgUgGCGCGCCgggaCCGCGCccgauAGGGG-CCg -3'
miRNA:   3'- -UGa-GgCGCGCGG----GGCGCG-----UCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 34272 0.66 0.481299
Target:  5'- -aUCCGCgugcuGCGCUCCGcCGCGGaaauauacguGGGUCa -3'
miRNA:   3'- ugAGGCG-----CGCGGGGC-GCGUC----------CCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.