miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 162063 0.68 0.382121
Target:  5'- cGCUaCCGCaagaacCGUgUCGCGUAGGGGcUCCg -3'
miRNA:   3'- -UGA-GGCGc-----GCGgGGCGCGUCCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 161924 0.66 0.470801
Target:  5'- uCUCCGaccuuccccccaGCGgCCCGCGaCAcGGGG-CCg -3'
miRNA:   3'- uGAGGCg-----------CGCgGGGCGC-GU-CCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 159667 0.72 0.218052
Target:  5'- --cCCGCGcCGUCgCGCGCGGaGGGUCg -3'
miRNA:   3'- ugaGGCGC-GCGGgGCGCGUC-CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 158494 0.67 0.446773
Target:  5'- uGCUgcgaCGCGCGCUcagCCGC-CAGGGGcaggCCu -3'
miRNA:   3'- -UGAg---GCGCGCGG---GGCGcGUCCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 157583 0.66 0.508022
Target:  5'- gGCUUgGgCGCuuCCCCGUagcccaGCAGGGcGUCCu -3'
miRNA:   3'- -UGAGgC-GCGc-GGGGCG------CGUCCC-CAGG- -5'
24394 3' -65.9 NC_005264.1 + 156883 0.76 0.12098
Target:  5'- -aUCCGCGaaugcgccgcUGCCCUGCGCgAGGGGuUCCg -3'
miRNA:   3'- ugAGGCGC----------GCGGGGCGCG-UCCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 152968 0.67 0.421804
Target:  5'- gGCcgUgGCGCGCCgggaCCGCGCccgauAGGGG-CCg -3'
miRNA:   3'- -UGa-GgCGCGCGG----GGCGCG-----UCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 149660 0.68 0.366959
Target:  5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3'
miRNA:   3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5'
24394 3' -65.9 NC_005264.1 + 149562 0.68 0.405633
Target:  5'- gACUcucCCGCGgacaGCCCCGgGCGGaGGGgggCUg -3'
miRNA:   3'- -UGA---GGCGCg---CGGGGCgCGUC-CCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 146665 0.66 0.526181
Target:  5'- --gCCGCGacCGaCCuCCGCGCAGGGcGgcauugCCg -3'
miRNA:   3'- ugaGGCGC--GC-GG-GGCGCGUCCC-Ca-----GG- -5'
24394 3' -65.9 NC_005264.1 + 146078 0.7 0.297517
Target:  5'- aACagCGCGC-CCCCGCGC--GGGUCUu -3'
miRNA:   3'- -UGagGCGCGcGGGGCGCGucCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 143740 0.67 0.421804
Target:  5'- uCUCCGCGC-CgCCGCGguGcaGUCCu -3'
miRNA:   3'- uGAGGCGCGcGgGGCGCguCccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 141126 0.67 0.446773
Target:  5'- uACUCCuGCGCGCa-CG-GCcGGGGUCa -3'
miRNA:   3'- -UGAGG-CGCGCGggGCgCGuCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 130795 0.66 0.490133
Target:  5'- uCUCCGgGCGCCUgGCucGCAcuccGGGGcagCCc -3'
miRNA:   3'- uGAGGCgCGCGGGgCG--CGU----CCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 128998 0.69 0.324008
Target:  5'- aGCUCUGC-CGCggCGCGCAGGGGa-- -3'
miRNA:   3'- -UGAGGCGcGCGggGCGCGUCCCCagg -5'
24394 3' -65.9 NC_005264.1 + 127839 0.68 0.385203
Target:  5'- cCUCCGCgGCGgccggcggucuagaaCCCgGCGCGcgaauGGGGUCUc -3'
miRNA:   3'- uGAGGCG-CGC---------------GGGgCGCGU-----CCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 125167 0.72 0.205459
Target:  5'- gGCgagggCCGCGCGCCCguCGCGCAucgcgugcacgauguGGGGcacgCCg -3'
miRNA:   3'- -UGa----GGCGCGCGGG--GCGCGU---------------CCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 124010 0.66 0.526181
Target:  5'- uGC-CCGCGCaucGUcgucguucucgUCCGCGCcGGGGUCg -3'
miRNA:   3'- -UGaGGCGCG---CG-----------GGGCGCGuCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 122604 0.66 0.498147
Target:  5'- cCUCCGCguaacgccaggagGCGCgaagaauuaCCGcCGCGGGGGgCCg -3'
miRNA:   3'- uGAGGCG-------------CGCGg--------GGC-GCGUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 122572 0.68 0.382121
Target:  5'- -gUCaCGCaGCGCCgcaCCGCGUuGGGGUaCCg -3'
miRNA:   3'- ugAG-GCG-CGCGG---GGCGCGuCCCCA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.