Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24394 | 3' | -65.9 | NC_005264.1 | + | 62213 | 0.67 | 0.421804 |
Target: 5'- aACUUgaggGCGCGCUCCGCGgCcgcuucGGGGUCg -3' miRNA: 3'- -UGAGg---CGCGCGGGGCGC-Gu-----CCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 9325 | 0.69 | 0.324008 |
Target: 5'- gUUCCGUuCGuCCCCGC-CAGGGGcggCCg -3' miRNA: 3'- uGAGGCGcGC-GGGGCGcGUCCCCa--GG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 60886 | 0.69 | 0.352216 |
Target: 5'- uCUCgGCGUaCgCCGCGguGGGG-CCg -3' miRNA: 3'- uGAGgCGCGcGgGGCGCguCCCCaGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 149660 | 0.68 | 0.366959 |
Target: 5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3' miRNA: 3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 5527 | 0.68 | 0.374488 |
Target: 5'- gACagCCGCgGCGUCUCGCGCGGagcGGGUUUc -3' miRNA: 3'- -UGa-GGCG-CGCGGGGCGCGUC---CCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 72201 | 0.68 | 0.374488 |
Target: 5'- uCUCCGCGCGCCCUuc---GGGGUUg -3' miRNA: 3'- uGAGGCGCGCGGGGcgcguCCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 18410 | 0.68 | 0.389857 |
Target: 5'- gUUCCggccggcgcagGCGCGCCCUcucgcucgGCGC-GGGGUCg -3' miRNA: 3'- uGAGG-----------CGCGCGGGG--------CGCGuCCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 3821 | 0.68 | 0.397695 |
Target: 5'- uGCUCCcuGCGCGCggagaCCUGCuccugGCAuGGGUCCu -3' miRNA: 3'- -UGAGG--CGCGCG-----GGGCG-----CGUcCCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 32301 | 0.68 | 0.397695 |
Target: 5'- cACgcgCCGCGaCGCUUCGCGCA--GGUCUa -3' miRNA: 3'- -UGa--GGCGC-GCGGGGCGCGUccCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 62998 | 0.69 | 0.319924 |
Target: 5'- gACUCCaagGCGUGCUUgGCGCAcuccagccuuaccccGGGGUCg -3' miRNA: 3'- -UGAGG---CGCGCGGGgCGCGU---------------CCCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 80324 | 0.71 | 0.272737 |
Target: 5'- -aUCCGUGCcagacaaugGCUCCGCGCGGgucGGGUCg -3' miRNA: 3'- ugAGGCGCG---------CGGGGCGCGUC---CCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 20262 | 0.71 | 0.266806 |
Target: 5'- --gCgGCGCgGCCUCGCGgAGGGGaCCg -3' miRNA: 3'- ugaGgCGCG-CGGGGCGCgUCCCCaGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 3428 | 0.73 | 0.185581 |
Target: 5'- --gCgGCGCGCCCCacuuCuCAGGGGUCCg -3' miRNA: 3'- ugaGgCGCGCGGGGc---GcGUCCCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 125167 | 0.72 | 0.205459 |
Target: 5'- gGCgagggCCGCGCGCCCguCGCGCAucgcgugcacgauguGGGGcacgCCg -3' miRNA: 3'- -UGa----GGCGCGCGGG--GCGCGU---------------CCCCa---GG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 64527 | 0.72 | 0.213132 |
Target: 5'- -gUCCGCGC-CgCCGCGgAGGGGgguUCCg -3' miRNA: 3'- ugAGGCGCGcGgGGCGCgUCCCC---AGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 71427 | 0.72 | 0.218052 |
Target: 5'- gACUCCGCcgGUGCCCCgGCGCuAGGGccaaCCa -3' miRNA: 3'- -UGAGGCG--CGCGGGG-CGCG-UCCCca--GG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 159667 | 0.72 | 0.218052 |
Target: 5'- --cCCGCGcCGUCgCGCGCGGaGGGUCg -3' miRNA: 3'- ugaGGCGC-GCGGgGCGCGUC-CCCAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 12139 | 0.72 | 0.228184 |
Target: 5'- cCUCCGCcgGCGCugCCCGuUGCuGGGGUCUc -3' miRNA: 3'- uGAGGCG--CGCG--GGGC-GCGuCCCCAGG- -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 64732 | 0.71 | 0.244125 |
Target: 5'- gGCUCgGCGCcguGCCCCGCGCAaGGaUCg -3' miRNA: 3'- -UGAGgCGCG---CGGGGCGCGUcCCcAGg -5' |
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24394 | 3' | -65.9 | NC_005264.1 | + | 58121 | 0.71 | 0.244125 |
Target: 5'- cGCUgCUGCGCGaCCUCGCGCAGccGUCUg -3' miRNA: 3'- -UGA-GGCGCGC-GGGGCGCGUCccCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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