miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 77066 0.66 0.508022
Target:  5'- aGCUUaacaGC-CCCCGCGCaaugucuuGGGGGUCUc -3'
miRNA:   3'- -UGAGgcg-CGcGGGGCGCG--------UCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 127839 0.68 0.385203
Target:  5'- cCUCCGCgGCGgccggcggucuagaaCCCgGCGCGcgaauGGGGUCUc -3'
miRNA:   3'- uGAGGCG-CGC---------------GGGgCGCGU-----CCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 122572 0.68 0.382121
Target:  5'- -gUCaCGCaGCGCCgcaCCGCGUuGGGGUaCCg -3'
miRNA:   3'- ugAG-GCG-CGCGG---GGCGCGuCCCCA-GG- -5'
24394 3' -65.9 NC_005264.1 + 117075 1.09 0.000428
Target:  5'- cACUCCGCGCGCCCCGCGCAGGGGUCCu -3'
miRNA:   3'- -UGAGGCGCGCGGGGCGCGUCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 11769 0.66 0.490133
Target:  5'- uCUCCGgGCGCCUgGCucGCAcuccGGGGcagCCc -3'
miRNA:   3'- uGAGGCgCGCGGGgCG--CGU----CCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 40640 0.66 0.481299
Target:  5'- --cCCGCGcCGUCgCGaCGCGGaGGGUCg -3'
miRNA:   3'- ugaGGCGC-GCGGgGC-GCGUC-CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 2498 0.67 0.455277
Target:  5'- -gUCgGCGgGCCUCGCGCgacuucagcgcgGGGGGcgacuUCCc -3'
miRNA:   3'- ugAGgCGCgCGGGGCGCG------------UCCCC-----AGG- -5'
24394 3' -65.9 NC_005264.1 + 21252 0.67 0.446773
Target:  5'- gGCUCgagUGUGCGCgCCGCGgAGGuGGUaacgCCa -3'
miRNA:   3'- -UGAG---GCGCGCGgGGCGCgUCC-CCA----GG- -5'
24394 3' -65.9 NC_005264.1 + 95979 0.67 0.445927
Target:  5'- uCUCCGCGCGCgaucuauuUUCGCGUcGGGcgacggcGUCCg -3'
miRNA:   3'- uGAGGCGCGCG--------GGGCGCGuCCC-------CAGG- -5'
24394 3' -65.9 NC_005264.1 + 100255 0.68 0.400858
Target:  5'- uACUUCGCGCGgucaauuuuaucgaUCCGCGCAGcGGGcUCg -3'
miRNA:   3'- -UGAGGCGCGCg-------------GGGCGCGUC-CCC-AGg -5'
24394 3' -65.9 NC_005264.1 + 143740 0.67 0.421804
Target:  5'- uCUCCGCGC-CgCCGCGguGcaGUCCu -3'
miRNA:   3'- uGAGGCGCGcGgGGCGCguCccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 39467 0.67 0.446773
Target:  5'- uGCUgcgaCGCGCGCUcagCCGC-CAGGGGcaggCCu -3'
miRNA:   3'- -UGAg---GCGCGCGG---GGCGcGUCCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 157583 0.66 0.508022
Target:  5'- gGCUUgGgCGCuuCCCCGUagcccaGCAGGGcGUCCu -3'
miRNA:   3'- -UGAGgC-GCGc-GGGGCG------CGUCCC-CAGG- -5'
24394 3' -65.9 NC_005264.1 + 16152 0.67 0.419354
Target:  5'- -aUCuCGCGCagggcggcaaugccGCCCUGCGCGGaGGUCg -3'
miRNA:   3'- ugAG-GCGCG--------------CGGGGCGCGUCcCCAGg -5'
24394 3' -65.9 NC_005264.1 + 3577 0.66 0.498147
Target:  5'- cCUCCGCguaacgccaggagGCGCgaagaauuaCCGcCGCGGGGGgCCg -3'
miRNA:   3'- uGAGGCG-------------CGCGg--------GGC-GCGUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 141126 0.67 0.446773
Target:  5'- uACUCCuGCGCGCa-CG-GCcGGGGUCa -3'
miRNA:   3'- -UGAGG-CGCGCGggGCgCGuCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 149562 0.68 0.405633
Target:  5'- gACUcucCCGCGgacaGCCCCGgGCGGaGGGgggCUg -3'
miRNA:   3'- -UGA---GGCGCg---CGGGGCgCGUC-CCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 162063 0.68 0.382121
Target:  5'- cGCUaCCGCaagaacCGUgUCGCGUAGGGGcUCCg -3'
miRNA:   3'- -UGA-GGCGc-----GCGgGGCGCGUCCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 3175 0.66 0.490133
Target:  5'- cCUCCGCGuCGCgaCgGCGCGGGGa--- -3'
miRNA:   3'- uGAGGCGC-GCGg-GgCGCGUCCCcagg -5'
24394 3' -65.9 NC_005264.1 + 68441 0.67 0.455277
Target:  5'- -gUCCGCGCcgcgGUCUgCGCGCGGaGGGccUCCa -3'
miRNA:   3'- ugAGGCGCG----CGGG-GCGCGUC-CCC--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.