miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 5' -54 NC_005264.1 + 117112 1.1 0.004434
Target:  5'- uUCGGAGCCGUCGAUGCGGAGUAUACGg -3'
miRNA:   3'- -AGCCUCGGCAGCUACGCCUCAUAUGC- -5'
24394 5' -54 NC_005264.1 + 108149 0.73 0.721893
Target:  5'- -gGGGGCCGUCGAgccucGCGGGGa--GCGu -3'
miRNA:   3'- agCCUCGGCAGCUa----CGCCUCauaUGC- -5'
24394 5' -54 NC_005264.1 + 45914 0.72 0.751146
Target:  5'- aCGGAGCCGagcagcuaguuUCGAUGCGGuGcaugACGu -3'
miRNA:   3'- aGCCUCGGC-----------AGCUACGCCuCaua-UGC- -5'
24394 5' -54 NC_005264.1 + 117421 0.7 0.832311
Target:  5'- aUCGGGGCUGUCGcgGCGcGcAGg--GCGc -3'
miRNA:   3'- -AGCCUCGGCAGCuaCGC-C-UCauaUGC- -5'
24394 5' -54 NC_005264.1 + 149591 0.7 0.848563
Target:  5'- -gGGGGCUGcUCGAUGCcGAGUcuuUGCGg -3'
miRNA:   3'- agCCUCGGC-AGCUACGcCUCAu--AUGC- -5'
24394 5' -54 NC_005264.1 + 40801 0.69 0.898981
Target:  5'- gCGGAGCCGcUUGccGCGGGGUcgcCGa -3'
miRNA:   3'- aGCCUCGGC-AGCuaCGCCUCAuauGC- -5'
24394 5' -54 NC_005264.1 + 150552 0.68 0.911373
Target:  5'- cUCGGgcggggagGGCCGUUGggGUGGGGgcggACGg -3'
miRNA:   3'- -AGCC--------UCGGCAGCuaCGCCUCaua-UGC- -5'
24394 5' -54 NC_005264.1 + 43779 0.68 0.911373
Target:  5'- aCGGAgacucGCCGUgGGUGCGGGGc--GCa -3'
miRNA:   3'- aGCCU-----CGGCAgCUACGCCUCauaUGc -5'
24394 5' -54 NC_005264.1 + 31525 0.68 0.911373
Target:  5'- cUCGGgcggggagGGCCGUUGggGUGGGGgcggACGg -3'
miRNA:   3'- -AGCC--------UCGGCAGCuaCGCCUCaua-UGC- -5'
24394 5' -54 NC_005264.1 + 162805 0.68 0.911373
Target:  5'- aCGGAgacucGCCGUgGGUGCGGGGc--GCa -3'
miRNA:   3'- aGCCU-----CGGCAgCUACGCCUCauaUGc -5'
24394 5' -54 NC_005264.1 + 96644 0.68 0.917217
Target:  5'- gCGGAGgcgcaccgcCCGcCGAUGCGGGcgGUGCGc -3'
miRNA:   3'- aGCCUC---------GGCaGCUACGCCUcaUAUGC- -5'
24394 5' -54 NC_005264.1 + 121911 0.68 0.922824
Target:  5'- cCGGGGCgCGgCGcgGCGGGGaggGCGa -3'
miRNA:   3'- aGCCUCG-GCaGCuaCGCCUCauaUGC- -5'
24394 5' -54 NC_005264.1 + 2885 0.68 0.922824
Target:  5'- cCGGGGCgCGgCGcgGCGGGGaggGCGa -3'
miRNA:   3'- aGCCUCG-GCaGCuaCGCCUCauaUGC- -5'
24394 5' -54 NC_005264.1 + 149430 0.68 0.933324
Target:  5'- gCGGucGCgCGcCGGUGCGGAGagcUGCGg -3'
miRNA:   3'- aGCCu-CG-GCaGCUACGCCUCau-AUGC- -5'
24394 5' -54 NC_005264.1 + 30403 0.68 0.933324
Target:  5'- gCGGucGCgCGcCGGUGCGGAGagcUGCGg -3'
miRNA:   3'- aGCCu-CG-GCaGCUACGCCUCau-AUGC- -5'
24394 5' -54 NC_005264.1 + 29230 0.67 0.938217
Target:  5'- -gGGAGCCagcgGUCGAggagcacaGCGGAGacUGCGg -3'
miRNA:   3'- agCCUCGG----CAGCUa-------CGCCUCauAUGC- -5'
24394 5' -54 NC_005264.1 + 17277 0.67 0.942874
Target:  5'- aCGGAGgCGaCGggGCGGAGg--GCu -3'
miRNA:   3'- aGCCUCgGCaGCuaCGCCUCauaUGc -5'
24394 5' -54 NC_005264.1 + 17360 0.67 0.942874
Target:  5'- gCGGcAGCUGgcggCGgcGCGGucuGUGUACGu -3'
miRNA:   3'- aGCC-UCGGCa---GCuaCGCCu--CAUAUGC- -5'
24394 5' -54 NC_005264.1 + 98226 0.67 0.955448
Target:  5'- gUCGG-GCCG-CGcUGCGGAGagguUAUGg -3'
miRNA:   3'- -AGCCuCGGCaGCuACGCCUCau--AUGC- -5'
24394 5' -54 NC_005264.1 + 7074 0.67 0.959184
Target:  5'- cCGGcGCCGUCGcgcUGCGGGGa----- -3'
miRNA:   3'- aGCCuCGGCAGCu--ACGCCUCauaugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.