miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 162210 0.68 0.827941
Target:  5'- uCU-AUCGCGCUGccUGCGACGcGGGCCGg -3'
miRNA:   3'- uGAcUGGCGCGAC--AUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 88749 0.69 0.81943
Target:  5'- --cGACCGCGCcaUGUACGACcacacuacuccgGAuGCCGc -3'
miRNA:   3'- ugaCUGGCGCG--ACAUGCUG------------CUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 75414 0.69 0.792906
Target:  5'- --cGGCCGCGggcagUGUACGGCG-GGCCGu -3'
miRNA:   3'- ugaCUGGCGCg----ACAUGCUGCuUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 83253 0.69 0.783764
Target:  5'- cGCUGA-UGCGCUGgcGCGGCGAacuucaauuucGGCCGc -3'
miRNA:   3'- -UGACUgGCGCGACa-UGCUGCU-----------UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 35028 0.69 0.774485
Target:  5'- cGCUGGCCGUcCUGgcCGACGcccGCCGu -3'
miRNA:   3'- -UGACUGGCGcGACauGCUGCuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 136455 0.69 0.774485
Target:  5'- cGCUGagGCCGCGCUcagaGACGgcGCCGc -3'
miRNA:   3'- -UGAC--UGGCGCGAcaugCUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 154055 0.69 0.774485
Target:  5'- cGCUGGCCGUcCUGgcCGACGcccGCCGu -3'
miRNA:   3'- -UGACUGGCGcGACauGCUGCuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 39494 0.7 0.755556
Target:  5'- gGCaGGCCuGCGCUGUG-GugGAcGCCAg -3'
miRNA:   3'- -UGaCUGG-CGCGACAUgCugCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 158521 0.7 0.755556
Target:  5'- gGCaGGCCuGCGCUGUG-GugGAcGCCAg -3'
miRNA:   3'- -UGaCUGG-CGCGACAUgCugCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 97522 0.7 0.745923
Target:  5'- aGCUG-CCGCgGCUGUgGCGugGcagcgggcaaGAGCCAg -3'
miRNA:   3'- -UGACuGGCG-CGACA-UGCugC----------UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 129601 0.7 0.745923
Target:  5'- cGCUG-CgGCGCg--GCGGCGAAGCUu -3'
miRNA:   3'- -UGACuGgCGCGacaUGCUGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 44568 0.7 0.745923
Target:  5'- ---cGCCGUGCUGggugACGACGAGGUg- -3'
miRNA:   3'- ugacUGGCGCGACa---UGCUGCUUCGgu -5'
24396 3' -55.6 NC_005264.1 + 75103 0.7 0.726367
Target:  5'- cUUGACgcaguCGCGCUGcgGCGAUGaAAGCCAc -3'
miRNA:   3'- uGACUG-----GCGCGACa-UGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 156511 0.71 0.716463
Target:  5'- aACgagGACUGCG-UGUACGccacGCGAAGCCu -3'
miRNA:   3'- -UGa--CUGGCGCgACAUGC----UGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 254 0.71 0.706487
Target:  5'- --cGGCgGCGCUGgacGCGGCaGAAGCCc -3'
miRNA:   3'- ugaCUGgCGCGACa--UGCUG-CUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 138777 0.71 0.696448
Target:  5'- cCUGGCCGUGCUGUugGcUGuguccGCCAu -3'
miRNA:   3'- uGACUGGCGCGACAugCuGCuu---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 58636 0.71 0.686354
Target:  5'- --cGACgCGUGCUcUGCGGCGAGGUCGa -3'
miRNA:   3'- ugaCUG-GCGCGAcAUGCUGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 57501 0.71 0.676216
Target:  5'- uGCUGGCgCGCGCg--GCGGCGAgAGCUc -3'
miRNA:   3'- -UGACUG-GCGCGacaUGCUGCU-UCGGu -5'
24396 3' -55.6 NC_005264.1 + 91028 0.72 0.625156
Target:  5'- uGCUG-CCGCGUaUGUGCGAacacgagcgaGAAGCCGa -3'
miRNA:   3'- -UGACuGGCGCG-ACAUGCUg---------CUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 101823 0.73 0.608796
Target:  5'- cGCUGACCGC-CUGgcCGAagccgaggcagagaaCGAGGCCGc -3'
miRNA:   3'- -UGACUGGCGcGACauGCU---------------GCUUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.