miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 53282 0.66 0.925576
Target:  5'- cCUGGCCGCGCgg-GCuuCGggGgCAa -3'
miRNA:   3'- uGACUGGCGCGacaUGcuGCuuCgGU- -5'
24396 3' -55.6 NC_005264.1 + 56811 0.66 0.935856
Target:  5'- uUUGucCUGCGCUGcGCGGCGGcccuAGCUAg -3'
miRNA:   3'- uGACu-GGCGCGACaUGCUGCU----UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 57501 0.71 0.676216
Target:  5'- uGCUGGCgCGCGCg--GCGGCGAgAGCUc -3'
miRNA:   3'- -UGACUG-GCGCGacaUGCUGCU-UCGGu -5'
24396 3' -55.6 NC_005264.1 + 58636 0.71 0.686354
Target:  5'- --cGACgCGUGCUcUGCGGCGAGGUCGa -3'
miRNA:   3'- ugaCUG-GCGCGAcAUGCUGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 59774 0.74 0.514497
Target:  5'- aACUGGCCGUgGCUGUccACGgccguguccgccGCGGAGCCGu -3'
miRNA:   3'- -UGACUGGCG-CGACA--UGC------------UGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 62592 0.66 0.920078
Target:  5'- aAUUGACCGCGCgaaGUaGCGGCGcggacguuccGAGCa- -3'
miRNA:   3'- -UGACUGGCGCGa--CA-UGCUGC----------UUCGgu -5'
24396 3' -55.6 NC_005264.1 + 64512 0.67 0.889042
Target:  5'- --gGACCGCGCUGUucuguCcGCGccGCCGc -3'
miRNA:   3'- ugaCUGGCGCGACAu----GcUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 74245 0.78 0.331601
Target:  5'- cGCUGGCCGCGCUccagacacggcgGUAgaGGCGggGCCu -3'
miRNA:   3'- -UGACUGGCGCGA------------CAUg-CUGCuuCGGu -5'
24396 3' -55.6 NC_005264.1 + 75103 0.7 0.726367
Target:  5'- cUUGACgcaguCGCGCUGcgGCGAUGaAAGCCAc -3'
miRNA:   3'- uGACUG-----GCGCGACa-UGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 75414 0.69 0.792906
Target:  5'- --cGGCCGCGggcagUGUACGGCG-GGCCGu -3'
miRNA:   3'- ugaCUGGCGCg----ACAUGCUGCuUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 77748 0.67 0.867683
Target:  5'- aGCUGACUacgGCGCcGUauccgaaucugACGACGcGGCCGc -3'
miRNA:   3'- -UGACUGG---CGCGaCA-----------UGCUGCuUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 79782 0.66 0.914341
Target:  5'- -gUGACCGUacuauugacauuGCUaGUGCGcaACGAGGCCc -3'
miRNA:   3'- ugACUGGCG------------CGA-CAUGC--UGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 82172 0.67 0.882143
Target:  5'- aACUG-CCGUGCggccgGU-CGGCGGcGGCCAu -3'
miRNA:   3'- -UGACuGGCGCGa----CAuGCUGCU-UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 83253 0.69 0.783764
Target:  5'- cGCUGA-UGCGCUGgcGCGGCGAacuucaauuucGGCCGc -3'
miRNA:   3'- -UGACUgGCGCGACa-UGCUGCU-----------UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 85992 0.76 0.421372
Target:  5'- -gUGACCGCGCUGU-UGAUGGgcaaGGCCAu -3'
miRNA:   3'- ugACUGGCGCGACAuGCUGCU----UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 86739 0.67 0.889042
Target:  5'- uCUGauGCCGCGCUGUucGCGccCGuaGAGCCGu -3'
miRNA:   3'- uGAC--UGGCGCGACA--UGCu-GC--UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 87119 0.68 0.836275
Target:  5'- aACUGcCaCGCGCUGUACGcCGAGaucGUCGc -3'
miRNA:   3'- -UGACuG-GCGCGACAUGCuGCUU---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 88749 0.69 0.81943
Target:  5'- --cGACCGCGCcaUGUACGACcacacuacuccgGAuGCCGc -3'
miRNA:   3'- ugaCUGGCGCG--ACAUGCUG------------CUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 91028 0.72 0.625156
Target:  5'- uGCUG-CCGCGUaUGUGCGAacacgagcgaGAAGCCGa -3'
miRNA:   3'- -UGACuGGCGCG-ACAUGCUg---------CUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 93860 0.66 0.935856
Target:  5'- cACUGGCC-CGCUaaGCuGGCG-AGCCAg -3'
miRNA:   3'- -UGACUGGcGCGAcaUG-CUGCuUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.