miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 254 0.71 0.706487
Target:  5'- --cGGCgGCGCUGgacGCGGCaGAAGCCc -3'
miRNA:   3'- ugaCUGgCGCGACa--UGCUG-CUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 1513 0.66 0.919515
Target:  5'- cGCUGGCUGCGCcGUuuuuuggggccccGCGGCGuugaccgcGCCGg -3'
miRNA:   3'- -UGACUGGCGCGaCA-------------UGCUGCuu------CGGU- -5'
24396 3' -55.6 NC_005264.1 + 3067 0.66 0.935856
Target:  5'- cGCUGucucGCCGCGaCUGgcgGCGGcCGAGGaCCc -3'
miRNA:   3'- -UGAC----UGGCGC-GACa--UGCU-GCUUC-GGu -5'
24396 3' -55.6 NC_005264.1 + 3198 0.66 0.935856
Target:  5'- cCUGGCCGCGUuccUGUcuuCG-CGuAGCCAc -3'
miRNA:   3'- uGACUGGCGCG---ACAu--GCuGCuUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 3964 0.66 0.920078
Target:  5'- cCUGGCCGCGCcGgcCGGCuuuaccGCCAg -3'
miRNA:   3'- uGACUGGCGCGaCauGCUGcuu---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 4089 0.68 0.836275
Target:  5'- cACgGGCgGCGUcgcgGcACGACGggGCCGa -3'
miRNA:   3'- -UGaCUGgCGCGa---CaUGCUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 4899 0.66 0.935856
Target:  5'- --gGACCGCGgaGgcgaGCGACGAAGa-- -3'
miRNA:   3'- ugaCUGGCGCgaCa---UGCUGCUUCggu -5'
24396 3' -55.6 NC_005264.1 + 23232 0.67 0.882143
Target:  5'- uCUGGCCaCGUUGgagccguagACGACGGAGCa- -3'
miRNA:   3'- uGACUGGcGCGACa--------UGCUGCUUCGgu -5'
24396 3' -55.6 NC_005264.1 + 33404 0.67 0.875022
Target:  5'- --cGACCGCGgugaUGUugGGCGAGuacGCCc -3'
miRNA:   3'- ugaCUGGCGCg---ACAugCUGCUU---CGGu -5'
24396 3' -55.6 NC_005264.1 + 34331 0.68 0.852378
Target:  5'- gGCUGACU-CGCUG-ACG-CGAGGUCGg -3'
miRNA:   3'- -UGACUGGcGCGACaUGCuGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 35028 0.69 0.774485
Target:  5'- cGCUGGCCGUcCUGgcCGACGcccGCCGu -3'
miRNA:   3'- -UGACUGGCGcGACauGCUGCuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 37726 0.66 0.908367
Target:  5'- uCUG-CCGcCGCU--ACGACGcGAGCCAa -3'
miRNA:   3'- uGACuGGC-GCGAcaUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 38341 0.74 0.514497
Target:  5'- cCUGGCCGUgauGCUGgGCGGCGggGCg- -3'
miRNA:   3'- uGACUGGCG---CGACaUGCUGCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 38751 0.66 0.908367
Target:  5'- gGCUGGCCGC-CU-UGCGACcccuGCCAg -3'
miRNA:   3'- -UGACUGGCGcGAcAUGCUGcuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 39494 0.7 0.755556
Target:  5'- gGCaGGCCuGCGCUGUG-GugGAcGCCAg -3'
miRNA:   3'- -UGaCUGG-CGCGACAUgCugCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 40276 0.67 0.889042
Target:  5'- uGCUGgacgccGCCGCGUcgcgGUuCGACGAGGCgGa -3'
miRNA:   3'- -UGAC------UGGCGCGa---CAuGCUGCUUCGgU- -5'
24396 3' -55.6 NC_005264.1 + 43183 0.68 0.827941
Target:  5'- uCU-AUCGCGCUGccUGCGACGcGGGCCGg -3'
miRNA:   3'- uGAcUGGCGCGAC--AUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 43368 0.67 0.902157
Target:  5'- --cGACCGCGCauagGUACGA-GAcGCUAg -3'
miRNA:   3'- ugaCUGGCGCGa---CAUGCUgCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 44568 0.7 0.745923
Target:  5'- ---cGCCGUGCUGggugACGACGAGGUg- -3'
miRNA:   3'- ugacUGGCGCGACa---UGCUGCUUCGgu -5'
24396 3' -55.6 NC_005264.1 + 45816 0.73 0.594517
Target:  5'- cGCUGAUCGCGCUGUACu-CGucaugcGCCGc -3'
miRNA:   3'- -UGACUGGCGCGACAUGcuGCuu----CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.