miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 159303 0.67 0.889042
Target:  5'- uGCUGgacgccGCCGCGUcgcgGUuCGACGAGGCgGa -3'
miRNA:   3'- -UGAC------UGGCGCGa---CAuGCUGCUUCGgU- -5'
24396 3' -55.6 NC_005264.1 + 87119 0.68 0.836275
Target:  5'- aACUGcCaCGCGCUGUACGcCGAGaucGUCGc -3'
miRNA:   3'- -UGACuG-GCGCGACAUGCuGCUU---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 123116 0.68 0.836275
Target:  5'- cACgGGCgGCGUcgcgGcACGACGggGCCGa -3'
miRNA:   3'- -UGaCUGgCGCGa---CaUGCUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 153358 0.68 0.852378
Target:  5'- gGCUGACU-CGCUG-ACG-CGAGGUCGg -3'
miRNA:   3'- -UGACUGGcGCGACaUGCuGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 116441 0.68 0.860134
Target:  5'- uCUGGCCGCGggGgcgACGAuCGggGCg- -3'
miRNA:   3'- uGACUGGCGCgaCa--UGCU-GCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 77748 0.67 0.867683
Target:  5'- aGCUGACUacgGCGCcGUauccgaaucugACGACGcGGCCGc -3'
miRNA:   3'- -UGACUGG---CGCGaCA-----------UGCUGCuUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 33404 0.67 0.875022
Target:  5'- --cGACCGCGgugaUGUugGGCGAGuacGCCc -3'
miRNA:   3'- ugaCUGGCGCg---ACAugCUGCUU---CGGu -5'
24396 3' -55.6 NC_005264.1 + 64512 0.67 0.889042
Target:  5'- --gGACCGCGCUGUucuguCcGCGccGCCGc -3'
miRNA:   3'- ugaCUGGCGCGACAu----GcUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 86739 0.67 0.889042
Target:  5'- uCUGauGCCGCGCUGUucGCGccCGuaGAGCCGu -3'
miRNA:   3'- uGAC--UGGCGCGACA--UGCu-GC--UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 162210 0.68 0.827941
Target:  5'- uCU-AUCGCGCUGccUGCGACGcGGGCCGg -3'
miRNA:   3'- uGAcUGGCGCGAC--AUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 88749 0.69 0.81943
Target:  5'- --cGACCGCGCcaUGUACGACcacacuacuccgGAuGCCGc -3'
miRNA:   3'- ugaCUGGCGCG--ACAUGCUG------------CUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 136455 0.69 0.774485
Target:  5'- cGCUGagGCCGCGCUcagaGACGgcGCCGc -3'
miRNA:   3'- -UGAC--UGGCGCGAcaugCUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 59774 0.74 0.514497
Target:  5'- aACUGGCCGUgGCUGUccACGgccguguccgccGCGGAGCCGu -3'
miRNA:   3'- -UGACUGGCG-CGACA--UGC------------UGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 157368 0.74 0.514497
Target:  5'- cCUGGCCGUgauGCUGgGCGGCGggGCg- -3'
miRNA:   3'- uGACUGGCG---CGACaUGCUGCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 148500 0.73 0.564125
Target:  5'- cGCUGGUCGCGUUG-GCGGCGAGcGCCGc -3'
miRNA:   3'- -UGACUGGCGCGACaUGCUGCUU-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 91028 0.72 0.625156
Target:  5'- uGCUG-CCGCGUaUGUGCGAacacgagcgaGAAGCCGa -3'
miRNA:   3'- -UGACuGGCGCG-ACAUGCUg---------CUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 57501 0.71 0.676216
Target:  5'- uGCUGGCgCGCGCg--GCGGCGAgAGCUc -3'
miRNA:   3'- -UGACUG-GCGCGacaUGCUGCU-UCGGu -5'
24396 3' -55.6 NC_005264.1 + 254 0.71 0.706487
Target:  5'- --cGGCgGCGCUGgacGCGGCaGAAGCCc -3'
miRNA:   3'- ugaCUGgCGCGACa--UGCUG-CUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 158521 0.7 0.755556
Target:  5'- gGCaGGCCuGCGCUGUG-GugGAcGCCAg -3'
miRNA:   3'- -UGaCUGG-CGCGACAUgCugCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 154055 0.69 0.774485
Target:  5'- cGCUGGCCGUcCUGgcCGACGcccGCCGu -3'
miRNA:   3'- -UGACUGGCGcGACauGCUGCuu-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.