miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 115836 0.98 0.018711
Target:  5'- gACUGACCGCGCUaUGCGACGAAGCCAg -3'
miRNA:   3'- -UGACUGGCGCGAcAUGCUGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 145809 0.79 0.302633
Target:  5'- --cGGCCGCGCUGcugGCGACGAucGCCGc -3'
miRNA:   3'- ugaCUGGCGCGACa--UGCUGCUu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 74245 0.78 0.331601
Target:  5'- cGCUGGCCGCGCUccagacacggcgGUAgaGGCGggGCCu -3'
miRNA:   3'- -UGACUGGCGCGA------------CAUg-CUGCuuCGGu -5'
24396 3' -55.6 NC_005264.1 + 85992 0.76 0.421372
Target:  5'- -gUGACCGCGCUGU-UGAUGGgcaaGGCCAu -3'
miRNA:   3'- ugACUGGCGCGACAuGCUGCU----UCGGU- -5'
24396 3' -55.6 NC_005264.1 + 157368 0.74 0.514497
Target:  5'- cCUGGCCGUgauGCUGgGCGGCGggGCg- -3'
miRNA:   3'- uGACUGGCG---CGACaUGCUGCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 59774 0.74 0.514497
Target:  5'- aACUGGCCGUgGCUGUccACGgccguguccgccGCGGAGCCGu -3'
miRNA:   3'- -UGACUGGCG-CGACA--UGC------------UGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 38341 0.74 0.514497
Target:  5'- cCUGGCCGUgauGCUGgGCGGCGggGCg- -3'
miRNA:   3'- uGACUGGCG---CGACaUGCUGCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 95392 0.73 0.554081
Target:  5'- aGCUGGCCGCGCUgGUGCa--GggGCUu -3'
miRNA:   3'- -UGACUGGCGCGA-CAUGcugCuuCGGu -5'
24396 3' -55.6 NC_005264.1 + 148500 0.73 0.564125
Target:  5'- cGCUGGUCGCGUUG-GCGGCGAGcGCCGc -3'
miRNA:   3'- -UGACUGGCGCGACaUGCUGCUU-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 45816 0.73 0.594517
Target:  5'- cGCUGAUCGCGCUGUACu-CGucaugcGCCGc -3'
miRNA:   3'- -UGACUGGCGCGACAUGcuGCuu----CGGU- -5'
24396 3' -55.6 NC_005264.1 + 101823 0.73 0.608796
Target:  5'- cGCUGACCGC-CUGgcCGAagccgaggcagagaaCGAGGCCGc -3'
miRNA:   3'- -UGACUGGCGcGACauGCU---------------GCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 91028 0.72 0.625156
Target:  5'- uGCUG-CCGCGUaUGUGCGAacacgagcgaGAAGCCGa -3'
miRNA:   3'- -UGACuGGCGCG-ACAUGCUg---------CUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 57501 0.71 0.676216
Target:  5'- uGCUGGCgCGCGCg--GCGGCGAgAGCUc -3'
miRNA:   3'- -UGACUG-GCGCGacaUGCUGCU-UCGGu -5'
24396 3' -55.6 NC_005264.1 + 58636 0.71 0.686354
Target:  5'- --cGACgCGUGCUcUGCGGCGAGGUCGa -3'
miRNA:   3'- ugaCUG-GCGCGAcAUGCUGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 138777 0.71 0.696448
Target:  5'- cCUGGCCGUGCUGUugGcUGuguccGCCAu -3'
miRNA:   3'- uGACUGGCGCGACAugCuGCuu---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 254 0.71 0.706487
Target:  5'- --cGGCgGCGCUGgacGCGGCaGAAGCCc -3'
miRNA:   3'- ugaCUGgCGCGACa--UGCUG-CUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 156511 0.71 0.716463
Target:  5'- aACgagGACUGCG-UGUACGccacGCGAAGCCu -3'
miRNA:   3'- -UGa--CUGGCGCgACAUGC----UGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 75103 0.7 0.726367
Target:  5'- cUUGACgcaguCGCGCUGcgGCGAUGaAAGCCAc -3'
miRNA:   3'- uGACUG-----GCGCGACa-UGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 44568 0.7 0.745923
Target:  5'- ---cGCCGUGCUGggugACGACGAGGUg- -3'
miRNA:   3'- ugacUGGCGCGACa---UGCUGCUUCGgu -5'
24396 3' -55.6 NC_005264.1 + 97522 0.7 0.745923
Target:  5'- aGCUG-CCGCgGCUGUgGCGugGcagcgggcaaGAGCCAg -3'
miRNA:   3'- -UGACuGGCG-CGACA-UGCugC----------UUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.