Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24396 | 5' | -59.4 | NC_005264.1 | + | 115870 | 1.08 | 0.001695 |
Target: 5'- gUUUGGGUUCUCGAGCCCGCCACCCGGg -3' miRNA: 3'- -AAACCCAAGAGCUCGGGCGGUGGGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 34995 | 0.72 | 0.419311 |
Target: 5'- --cGGGUUCUaGAccGCCgGCCGCCgCGGa -3' miRNA: 3'- aaaCCCAAGAgCU--CGGgCGGUGG-GCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 158395 | 0.72 | 0.463328 |
Target: 5'- -aUGGGagC-CGuauauGCCCGCCGCCCGu -3' miRNA: 3'- aaACCCaaGaGCu----CGGGCGGUGGGCc -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 60590 | 0.72 | 0.463328 |
Target: 5'- --cGGcGUUCUCGAGCCCcuucucguauGCCGCggcagCCGGc -3' miRNA: 3'- aaaCC-CAAGAGCUCGGG----------CGGUG-----GGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 58257 | 0.69 | 0.627058 |
Target: 5'- aUUuGGUUacgcUUCGAGCCCGCUGCCUuGGa -3' miRNA: 3'- aAAcCCAA----GAGCUCGGGCGGUGGG-CC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 64673 | 0.69 | 0.637022 |
Target: 5'- --aGGGggUUUGGGCCUGCCGgCgGGc -3' miRNA: 3'- aaaCCCaaGAGCUCGGGCGGUgGgCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 528 | 0.69 | 0.637022 |
Target: 5'- -aUGGGgccgC-CGAGCaCCcaGCCAUCCGGa -3' miRNA: 3'- aaACCCaa--GaGCUCG-GG--CGGUGGGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 95381 | 0.68 | 0.646983 |
Target: 5'- --cGGGUUUcaCGAGCUgGCCGCgCUGGu -3' miRNA: 3'- aaaCCCAAGa-GCUCGGgCGGUG-GGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 102257 | 0.68 | 0.656932 |
Target: 5'- --aGGGg-CUCGAGaaCGCCGCCgCGGu -3' miRNA: 3'- aaaCCCaaGAGCUCggGCGGUGG-GCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 82851 | 0.68 | 0.656932 |
Target: 5'- --aGGGUUaCUCGGccGCCCGCcCAgCCGu -3' miRNA: 3'- aaaCCCAA-GAGCU--CGGGCG-GUgGGCc -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 26949 | 0.68 | 0.666862 |
Target: 5'- --aGGGUaCUCGaAGUCCGCCgggagGCCCa- -3' miRNA: 3'- aaaCCCAaGAGC-UCGGGCGG-----UGGGcc -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 57256 | 0.68 | 0.676766 |
Target: 5'- cUUGaGGcgCUCGAGCCCuaGCC-CgCGGg -3' miRNA: 3'- aAAC-CCaaGAGCUCGGG--CGGuGgGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 62554 | 0.68 | 0.676766 |
Target: 5'- ---cGGUUCcagcaagcCGAGCCCGCUGCgCGGa -3' miRNA: 3'- aaacCCAAGa-------GCUCGGGCGGUGgGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 106 | 0.67 | 0.706237 |
Target: 5'- --cGGGccgCUCGAGuuuccuuuuCCCGCUcCCCGGc -3' miRNA: 3'- aaaCCCaa-GAGCUC---------GGGCGGuGGGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 119133 | 0.67 | 0.706237 |
Target: 5'- --cGGGccgCUCGAGuuuccuuuuCCCGCUcCCCGGc -3' miRNA: 3'- aaaCCCaa-GAGCUC---------GGGCGGuGGGCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 83431 | 0.67 | 0.706237 |
Target: 5'- -cUGGGUUC-CGccgcGGCCuCGCCacGCCCGcGg -3' miRNA: 3'- aaACCCAAGaGC----UCGG-GCGG--UGGGC-C- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 101613 | 0.67 | 0.715953 |
Target: 5'- -gUGGcguaGUUCUCuGGGCUCuuGCCGCCCGa -3' miRNA: 3'- aaACC----CAAGAG-CUCGGG--CGGUGGGCc -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 67945 | 0.67 | 0.725601 |
Target: 5'- --gGGGUUCcCGGcGCCUGCgGCUCGa -3' miRNA: 3'- aaaCCCAAGaGCU-CGGGCGgUGGGCc -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 118357 | 0.67 | 0.754053 |
Target: 5'- aUUGGGUcUCgacgUCGAuggucacgaacGCCUGCCGCuuGGu -3' miRNA: 3'- aAACCCA-AG----AGCU-----------CGGGCGGUGggCC- -5' |
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24396 | 5' | -59.4 | NC_005264.1 | + | 61421 | 0.67 | 0.754053 |
Target: 5'- --cGGG-UCUCGuaugcuuucggcGGCCCGCUcCUCGGc -3' miRNA: 3'- aaaCCCaAGAGC------------UCGGGCGGuGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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