miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 5' -59.4 NC_005264.1 + 34995 0.72 0.419311
Target:  5'- --cGGGUUCUaGAccGCCgGCCGCCgCGGa -3'
miRNA:   3'- aaaCCCAAGAgCU--CGGgCGGUGG-GCC- -5'
24396 5' -59.4 NC_005264.1 + 3441 0.66 0.790524
Target:  5'- -----cUUCUCagGGGUCCGCCGCCCGu -3'
miRNA:   3'- aaacccAAGAG--CUCGGGCGGUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 149864 0.66 0.787857
Target:  5'- --cGGGcUCgCGucgucgucggcggcGGCgCGCCGCCCGGu -3'
miRNA:   3'- aaaCCCaAGaGC--------------UCGgGCGGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 116362 0.66 0.781588
Target:  5'- --aGGGUcuUCUguaGGGCCUGCCGuCgCGGg -3'
miRNA:   3'- aaaCCCA--AGAg--CUCGGGCGGU-GgGCC- -5'
24396 5' -59.4 NC_005264.1 + 61421 0.67 0.754053
Target:  5'- --cGGG-UCUCGuaugcuuucggcGGCCCGCUcCUCGGc -3'
miRNA:   3'- aaaCCCaAGAGC------------UCGGGCGGuGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 67945 0.67 0.725601
Target:  5'- --gGGGUUCcCGGcGCCUGCgGCUCGa -3'
miRNA:   3'- aaaCCCAAGaGCU-CGGGCGgUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 101613 0.67 0.715953
Target:  5'- -gUGGcguaGUUCUCuGGGCUCuuGCCGCCCGa -3'
miRNA:   3'- aaACC----CAAGAG-CUCGGG--CGGUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 119133 0.67 0.706237
Target:  5'- --cGGGccgCUCGAGuuuccuuuuCCCGCUcCCCGGc -3'
miRNA:   3'- aaaCCCaa-GAGCUC---------GGGCGGuGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 83431 0.67 0.706237
Target:  5'- -cUGGGUUC-CGccgcGGCCuCGCCacGCCCGcGg -3'
miRNA:   3'- aaACCCAAGaGC----UCGG-GCGG--UGGGC-C- -5'
24396 5' -59.4 NC_005264.1 + 62554 0.68 0.676766
Target:  5'- ---cGGUUCcagcaagcCGAGCCCGCUGCgCGGa -3'
miRNA:   3'- aaacCCAAGa-------GCUCGGGCGGUGgGCC- -5'
24396 5' -59.4 NC_005264.1 + 528 0.69 0.637022
Target:  5'- -aUGGGgccgC-CGAGCaCCcaGCCAUCCGGa -3'
miRNA:   3'- aaACCCaa--GaGCUCG-GG--CGGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 64673 0.69 0.637022
Target:  5'- --aGGGggUUUGGGCCUGCCGgCgGGc -3'
miRNA:   3'- aaaCCCaaGAGCUCGGGCGGUgGgCC- -5'
24396 5' -59.4 NC_005264.1 + 58257 0.69 0.627058
Target:  5'- aUUuGGUUacgcUUCGAGCCCGCUGCCUuGGa -3'
miRNA:   3'- aAAcCCAA----GAGCUCGGGCGGUGGG-CC- -5'
24396 5' -59.4 NC_005264.1 + 60590 0.72 0.463328
Target:  5'- --cGGcGUUCUCGAGCCCcuucucguauGCCGCggcagCCGGc -3'
miRNA:   3'- aaaCC-CAAGAGCUCGGG----------CGGUG-----GGCC- -5'
24396 5' -59.4 NC_005264.1 + 118357 0.67 0.754053
Target:  5'- aUUGGGUcUCgacgUCGAuggucacgaacGCCUGCCGCuuGGu -3'
miRNA:   3'- aAACCCA-AG----AGCU-----------CGGGCGGUGggCC- -5'
24396 5' -59.4 NC_005264.1 + 44882 0.66 0.763345
Target:  5'- -cUGGGgaggCGGGCCCGUCGucgUCUGGg -3'
miRNA:   3'- aaACCCaagaGCUCGGGCGGU---GGGCC- -5'
24396 5' -59.4 NC_005264.1 + 119438 0.66 0.772526
Target:  5'- --cGGGcgaUCUCGcuGCCCagGCCGCCCa- -3'
miRNA:   3'- aaaCCCa--AGAGCu-CGGG--CGGUGGGcc -5'
24396 5' -59.4 NC_005264.1 + 30838 0.66 0.787857
Target:  5'- --cGGGcUCgCGucgucgucggcggcGGCgCGCCGCCCGGu -3'
miRNA:   3'- aaaCCCaAGaGC--------------UCGgGCGGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 69406 0.66 0.799324
Target:  5'- --cGGGUaggCGcGCCUGCCGCCguCGGa -3'
miRNA:   3'- aaaCCCAagaGCuCGGGCGGUGG--GCC- -5'
24396 5' -59.4 NC_005264.1 + 115870 1.08 0.001695
Target:  5'- gUUUGGGUUCUCGAGCCCGCCACCCGGg -3'
miRNA:   3'- -AAACCCAAGAGCUCGGGCGGUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.