miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 93118 0.66 0.562867
Target:  5'- gC-CCGCGCuCCCGCGGUUCacgaUGGCGCc -3'
miRNA:   3'- gGuGGCGCG-GGGUGCCGGGa---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 32455 0.66 0.581962
Target:  5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3'
miRNA:   3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5'
24404 3' -63.8 NC_005264.1 + 66472 0.66 0.585798
Target:  5'- aCCGCCGCGgCCagacucaaugcuugGCGGgCUgcgCGGCGCg -3'
miRNA:   3'- -GGUGGCGCgGGg-------------UGCCgGGa--GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 141638 0.66 0.591561
Target:  5'- aCCGCCGUauugaGUCuaCUACGGCCggcCAGCACg -3'
miRNA:   3'- -GGUGGCG-----CGG--GGUGCCGGga-GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 146079 0.66 0.572396
Target:  5'- aCAgCGCGCCCCcgcGCGGgUCUUGGUg- -3'
miRNA:   3'- gGUgGCGCGGGG---UGCCgGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 133011 0.66 0.553382
Target:  5'- cCCACUuuGCCCCuacucCGGUUC-CAGCGCc -3'
miRNA:   3'- -GGUGGcgCGGGGu----GCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 90554 0.66 0.559068
Target:  5'- gCACCGCGUCuCCucguugcCGGCCaguacgccucugCAGCGCa -3'
miRNA:   3'- gGUGGCGCGG-GGu------GCCGGga----------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 52942 0.66 0.572396
Target:  5'- -gGCCGCG-CCCGCGGCgCauuGCGCc -3'
miRNA:   3'- ggUGGCGCgGGGUGCCGgGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28317 0.66 0.601185
Target:  5'- -uGCCGCGCgCCUACGucuaGUCgguaUCGGCACg -3'
miRNA:   3'- ggUGGCGCG-GGGUGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 38517 0.66 0.591561
Target:  5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3'
miRNA:   3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 161622 0.66 0.562867
Target:  5'- aUACCugaggcaCGCCCCACGGCCCauuaCAaCACc -3'
miRNA:   3'- gGUGGc------GCGGGGUGCCGGGa---GUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 143739 0.66 0.581004
Target:  5'- gUCuCCGCGCCgCCGCGGugcaguccuggcuCCCUauGCGCg -3'
miRNA:   3'- -GGuGGCGCGG-GGUGCC-------------GGGAguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 24360 0.66 0.571441
Target:  5'- cCCGCCGCucuggcaugaccgGCUUCGCGGCUCcccCGGCGg -3'
miRNA:   3'- -GGUGGCG-------------CGGGGUGCCGGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 144977 0.67 0.506773
Target:  5'- cCCGCCGauuGCUCaCGCGGUCgaaCAGCGCg -3'
miRNA:   3'- -GGUGGCg--CGGG-GUGCCGGga-GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 112520 0.67 0.543945
Target:  5'- aCGCCGCGUaCUCGCGGCUC-CAGg-- -3'
miRNA:   3'- gGUGGCGCG-GGGUGCCGGGaGUCgug -5'
24404 3' -63.8 NC_005264.1 + 58994 0.67 0.543945
Target:  5'- cCgGCCGgGCCCagaagcuUGGCgCUCAGCGa -3'
miRNA:   3'- -GgUGGCgCGGGgu-----GCCGgGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 93684 0.67 0.497646
Target:  5'- aUCACCGCGCUuaCCGUGGCag-UAGCGCg -3'
miRNA:   3'- -GGUGGCGCGG--GGUGCCGggaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 119054 0.67 0.543945
Target:  5'- -aACUGCGCCCCGCa-CCCaCGGCGa -3'
miRNA:   3'- ggUGGCGCGGGGUGccGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 120062 0.67 0.515971
Target:  5'- uCCGCCG-GCCguaacuggCCACccgGGUCgCUCGGCACg -3'
miRNA:   3'- -GGUGGCgCGG--------GGUG---CCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 128542 0.67 0.534561
Target:  5'- gCGCgGCGCCCUcgaGgGGCCCUCGa--- -3'
miRNA:   3'- gGUGgCGCGGGG---UgCCGGGAGUcgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.