miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 31834 0.66 0.601185
Target:  5'- uCUGCCGUGCCgCgCGCGGCaagacaUgGGCGCg -3'
miRNA:   3'- -GGUGGCGCGG-G-GUGCCGgg----AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 143401 0.66 0.569533
Target:  5'- gCCGaugaGCGCCUCGCGccuuauacgcuucaGCCUgUCAGCACa -3'
miRNA:   3'- -GGUgg--CGCGGGGUGC--------------CGGG-AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 41364 0.66 0.562867
Target:  5'- gCCGCCGCGaaa-ACGGCCuCUCuaauGUACg -3'
miRNA:   3'- -GGUGGCGCggggUGCCGG-GAGu---CGUG- -5'
24404 3' -63.8 NC_005264.1 + 74287 0.66 0.581962
Target:  5'- uUCGCCGCGaucucguaCCUGCGGCgCCaCAGUAUc -3'
miRNA:   3'- -GGUGGCGCg-------GGGUGCCG-GGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 70675 0.66 0.569533
Target:  5'- gCCGCCG-GCaggcaauuuuuacgCCCGCGGgCgaCAGCGCg -3'
miRNA:   3'- -GGUGGCgCG--------------GGGUGCCgGgaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 66206 0.66 0.572396
Target:  5'- gCGgUGCGCCuCCGCGGCCagcgaaggaCUUGGCGa -3'
miRNA:   3'- gGUgGCGCGG-GGUGCCGG---------GAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 69502 0.66 0.572396
Target:  5'- aUACaCGCGUgCCACgccguuagcuGGCCCUaggAGCACg -3'
miRNA:   3'- gGUG-GCGCGgGGUG----------CCGGGAg--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28317 0.66 0.601185
Target:  5'- -uGCCGCGCgCCUACGucuaGUCgguaUCGGCACg -3'
miRNA:   3'- ggUGGCGCG-GGGUGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 98570 0.66 0.553382
Target:  5'- gCGCCGCaagaugaacgGCgCCCGCaGCCC-CAGUAUg -3'
miRNA:   3'- gGUGGCG----------CG-GGGUGcCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 107476 0.66 0.591561
Target:  5'- aCCGCCGacgcgGCCCggcUAUGGCCaaaauacaCAGCACa -3'
miRNA:   3'- -GGUGGCg----CGGG---GUGCCGGga------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 58752 0.66 0.605041
Target:  5'- gCCGCUGCGCUaucagaggcgcacgCGCGGUggUCGGCGCa -3'
miRNA:   3'- -GGUGGCGCGGg-------------GUGCCGggAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 52942 0.66 0.572396
Target:  5'- -gGCCGCG-CCCGCGGCgCauuGCGCc -3'
miRNA:   3'- ggUGGCGCgGGGUGCCGgGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 3428 0.66 0.572396
Target:  5'- gCGgCGCGCCCCACuucucaggGGUCCgccgcccgUGGCGCc -3'
miRNA:   3'- gGUgGCGCGGGGUG--------CCGGGa-------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 159380 0.66 0.553382
Target:  5'- cCCAUCGC-CCCCGaGaCCCUCguGGCGCu -3'
miRNA:   3'- -GGUGGCGcGGGGUgCcGGGAG--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 144568 0.66 0.599258
Target:  5'- cCCGCUaGCGCUgUACGGCCCgugucgcccaugCGGUAa -3'
miRNA:   3'- -GGUGG-CGCGGgGUGCCGGGa-----------GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 133011 0.66 0.553382
Target:  5'- cCCACUuuGCCCCuacucCGGUUC-CAGCGCc -3'
miRNA:   3'- -GGUGGcgCGGGGu----GCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 6896 0.66 0.572396
Target:  5'- -aGCCGCGCaguCCCagcgcGCGGCUUUCcgugGGCGCg -3'
miRNA:   3'- ggUGGCGCG---GGG-----UGCCGGGAG----UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 122300 0.66 0.572396
Target:  5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3'
miRNA:   3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5'
24404 3' -63.8 NC_005264.1 + 14 0.66 0.578131
Target:  5'- gCACCGgcaCGCCauaacgCCGCGGCCCUagcuguucgaacgAGCGCu -3'
miRNA:   3'- gGUGGC---GCGG------GGUGCCGGGAg------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 55139 0.66 0.585798
Target:  5'- cCCGCCguGCGCUgUgcuggcgcagcguauGCGGCCuCUgGGCGCg -3'
miRNA:   3'- -GGUGG--CGCGGgG---------------UGCCGG-GAgUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.