Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24404 | 3' | -63.8 | NC_005264.1 | + | 60072 | 0.65 | 0.609865 |
Target: 5'- gCCACCGaacuggccCGCCCCuagccuacugccgGCGGCCCaCAaCGCc -3' miRNA: 3'- -GGUGGC--------GCGGGG-------------UGCCGGGaGUcGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 153221 | 0.65 | 0.609865 |
Target: 5'- -gAUCGCGUacagCCACGuuacggaGCCUUCGGCGCa -3' miRNA: 3'- ggUGGCGCGg---GGUGC-------CGGGAGUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 151482 | 0.66 | 0.581962 |
Target: 5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3' miRNA: 3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 157544 | 0.66 | 0.591561 |
Target: 5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3' miRNA: 3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 110736 | 0.66 | 0.581962 |
Target: 5'- uCCugCuCGCUUCGCGGCCUUCgccgaAGCGg -3' miRNA: 3'- -GGugGcGCGGGGUGCCGGGAG-----UCGUg -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 3428 | 0.66 | 0.572396 |
Target: 5'- gCGgCGCGCCCCACuucucaggGGUCCgccgcccgUGGCGCc -3' miRNA: 3'- gGUgGCGCGGGGUG--------CCGGGa-------GUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 66206 | 0.66 | 0.572396 |
Target: 5'- gCGgUGCGCCuCCGCGGCCagcgaaggaCUUGGCGa -3' miRNA: 3'- gGUgGCGCGG-GGUGCCGG---------GAGUCGUg -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 70675 | 0.66 | 0.569533 |
Target: 5'- gCCGCCG-GCaggcaauuuuuacgCCCGCGGgCgaCAGCGCg -3' miRNA: 3'- -GGUGGCgCG--------------GGGUGCCgGgaGUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 41364 | 0.66 | 0.562867 |
Target: 5'- gCCGCCGCGaaa-ACGGCCuCUCuaauGUACg -3' miRNA: 3'- -GGUGGCGCggggUGCCGG-GAGu---CGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 52942 | 0.66 | 0.572396 |
Target: 5'- -gGCCGCG-CCCGCGGCgCauuGCGCc -3' miRNA: 3'- ggUGGCGCgGGGUGCCGgGaguCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 98570 | 0.66 | 0.553382 |
Target: 5'- gCGCCGCaagaugaacgGCgCCCGCaGCCC-CAGUAUg -3' miRNA: 3'- gGUGGCG----------CG-GGGUGcCGGGaGUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 34166 | 0.66 | 0.591561 |
Target: 5'- gUACCGCGCCCUGCaGUCa-CAGCuGCu -3' miRNA: 3'- gGUGGCGCGGGGUGcCGGgaGUCG-UG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 122300 | 0.66 | 0.572396 |
Target: 5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3' miRNA: 3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 14 | 0.66 | 0.578131 |
Target: 5'- gCACCGgcaCGCCauaacgCCGCGGCCCUagcuguucgaacgAGCGCu -3' miRNA: 3'- gGUGGC---GCGG------GGUGCCGGGAg------------UCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 55139 | 0.66 | 0.585798 |
Target: 5'- cCCGCCguGCGCUgUgcuggcgcagcguauGCGGCCuCUgGGCGCg -3' miRNA: 3'- -GGUGG--CGCGGgG---------------UGCCGG-GAgUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 6896 | 0.66 | 0.572396 |
Target: 5'- -aGCCGCGCaguCCCagcgcGCGGCUUUCcgugGGCGCg -3' miRNA: 3'- ggUGGCGCG---GGG-----UGCCGGGAG----UCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 74287 | 0.66 | 0.581962 |
Target: 5'- uUCGCCGCGaucucguaCCUGCGGCgCCaCAGUAUc -3' miRNA: 3'- -GGUGGCGCg-------GGGUGCCG-GGaGUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 69502 | 0.66 | 0.572396 |
Target: 5'- aUACaCGCGUgCCACgccguuagcuGGCCCUaggAGCACg -3' miRNA: 3'- gGUG-GCGCGgGGUG----------CCGGGAg--UCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 143401 | 0.66 | 0.569533 |
Target: 5'- gCCGaugaGCGCCUCGCGccuuauacgcuucaGCCUgUCAGCACa -3' miRNA: 3'- -GGUgg--CGCGGGGUGC--------------CGGG-AGUCGUG- -5' |
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24404 | 3' | -63.8 | NC_005264.1 | + | 59705 | 0.66 | 0.581962 |
Target: 5'- gCGCCGCGCgCCGCG-CCggCGGCuACc -3' miRNA: 3'- gGUGGCGCGgGGUGCcGGgaGUCG-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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