miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 14 0.66 0.578131
Target:  5'- gCACCGgcaCGCCauaacgCCGCGGCCCUagcuguucgaacgAGCGCu -3'
miRNA:   3'- gGUGGC---GCGG------GGUGCCGGGAg------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 27 0.67 0.543945
Target:  5'- -aACUGCGCCCCGCa-CCCaCGGCGa -3'
miRNA:   3'- ggUGGCGCGGGGUGccGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 601 0.73 0.249992
Target:  5'- cCCGCCGUaGCCCCccccccccccgcCGGCCCgcgucgcaggCAGCGCg -3'
miRNA:   3'- -GGUGGCG-CGGGGu-----------GCCGGGa---------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 1035 0.67 0.515971
Target:  5'- uCCGCCG-GCCguaacuggCCACccgGGUCgCUCGGCACg -3'
miRNA:   3'- -GGUGGCgCGG--------GGUG---CCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 1521 0.67 0.534561
Target:  5'- gCGCCGUuuuuugggGCCCCGCGGCguugaCCgcgcCGGCAa -3'
miRNA:   3'- gGUGGCG--------CGGGGUGCCG-----GGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 1667 0.68 0.461919
Target:  5'- aCGCCaGCGCCUUuuguucucucguGCGG-UCUCAGCGCa -3'
miRNA:   3'- gGUGG-CGCGGGG------------UGCCgGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 2498 0.67 0.515971
Target:  5'- gUCGgCGgGCCUCGCGcGaCUUCAGCGCg -3'
miRNA:   3'- -GGUgGCgCGGGGUGC-CgGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 3273 0.66 0.572396
Target:  5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3'
miRNA:   3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5'
24404 3' -63.8 NC_005264.1 + 3428 0.66 0.572396
Target:  5'- gCGgCGCGCCCCACuucucaggGGUCCgccgcccgUGGCGCc -3'
miRNA:   3'- gGUgGCGCGGGGUG--------CCGGGa-------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 3433 0.69 0.386878
Target:  5'- -gGCCGCGCCCgCGCuGCUCgcaaAGCGCc -3'
miRNA:   3'- ggUGGCGCGGG-GUGcCGGGag--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 4601 0.67 0.525235
Target:  5'- cCCGCCaGCGCCgCgGCGGCgua-GGCGCg -3'
miRNA:   3'- -GGUGG-CGCGG-GgUGCCGggagUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 5794 0.67 0.506773
Target:  5'- aCCACCGagGCgCCCACGGCguucaauaguCCggCGGCGg -3'
miRNA:   3'- -GGUGGCg-CG-GGGUGCCG----------GGa-GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 6241 0.72 0.287223
Target:  5'- uCUGCgGCgGCCCCGCGGaUCCUCAGUc- -3'
miRNA:   3'- -GGUGgCG-CGGGGUGCC-GGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 6896 0.66 0.572396
Target:  5'- -aGCCGCGCaguCCCagcgcGCGGCUUUCcgugGGCGCg -3'
miRNA:   3'- ggUGGCGCG---GGG-----UGCCGGGAG----UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 7372 0.73 0.238316
Target:  5'- gCCGCCGCGgUuuucauuucuucgaUCGCGGCCC-CGGCGCc -3'
miRNA:   3'- -GGUGGCGCgG--------------GGUGCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 8038 0.68 0.4832
Target:  5'- gCCACCGCGCCCuccgCcucuucacccacgucGCGGCCgCagUCgGGCACg -3'
miRNA:   3'- -GGUGGCGCGGG----G---------------UGCCGG-G--AG-UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 8209 0.69 0.402046
Target:  5'- gCAUUaUGCCCCGCGGCCgCUgguccgaguacgcCAGCGCg -3'
miRNA:   3'- gGUGGcGCGGGGUGCCGG-GA-------------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 9515 0.67 0.534561
Target:  5'- gCGCgGCGCCCUcgaGgGGCCCUCGa--- -3'
miRNA:   3'- gGUGgCGCGGGG---UgCCGGGAGUcgug -5'
24404 3' -63.8 NC_005264.1 + 9761 0.7 0.356203
Target:  5'- gCCGCCGUGCuCCCACcuacGCUCUguGCGu -3'
miRNA:   3'- -GGUGGCGCG-GGGUGc---CGGGAguCGUg -5'
24404 3' -63.8 NC_005264.1 + 9879 0.68 0.444568
Target:  5'- uCC-CgGCGCgCCACGGCCUUCccagcccuggcGGCAg -3'
miRNA:   3'- -GGuGgCGCGgGGUGCCGGGAG-----------UCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.