miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 110641 1.1 0.000513
Target:  5'- gCCACCGCGCCCCACGGCCCUCAGCACa -3'
miRNA:   3'- -GGUGGCGCGGGGUGCCGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 143407 0.85 0.032953
Target:  5'- cCCAcCCGCGCCCCGCGGCCacaccCGGCGCc -3'
miRNA:   3'- -GGU-GGCGCGGGGUGCCGGga---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 62630 0.78 0.10886
Target:  5'- -aACUGCGCCCCGCGGagCUCAGCGa -3'
miRNA:   3'- ggUGGCGCGGGGUGCCggGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 151956 0.76 0.142637
Target:  5'- gCACCGgGaauuCCCCACGGCCCcucgCAGCAg -3'
miRNA:   3'- gGUGGCgC----GGGGUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 158568 0.76 0.153394
Target:  5'- uCUGCCGcCGCCCCGCGGuuCCCgcgCGGCAa -3'
miRNA:   3'- -GGUGGC-GCGGGGUGCC--GGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 39541 0.76 0.153394
Target:  5'- uCUGCCGcCGCCCCGCGGuuCCCgcgCGGCAa -3'
miRNA:   3'- -GGUGGC-GCGGGGUGCC--GGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 10156 0.76 0.160969
Target:  5'- uCCACCGCGUCCa--GGgCCUCGGCGa -3'
miRNA:   3'- -GGUGGCGCGGGgugCCgGGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 52707 0.75 0.164882
Target:  5'- gCCGCC-CGCCCCcaaaagcgcgGCGGCUCUCGGCc- -3'
miRNA:   3'- -GGUGGcGCGGGG----------UGCCGGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 138654 0.75 0.164882
Target:  5'- gCACCGCGCCagacuuuaccgaCCGCGGCCg-CAGCAg -3'
miRNA:   3'- gGUGGCGCGG------------GGUGCCGGgaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 137637 0.75 0.177136
Target:  5'- gCCACCguguGCGCCaacacguaCGCGGCCCUCAGaUGCu -3'
miRNA:   3'- -GGUGG----CGCGGg-------GUGCCGGGAGUC-GUG- -5'
24404 3' -63.8 NC_005264.1 + 61490 0.75 0.177136
Target:  5'- gCCGaCGCGCCCCGCGGUCUcggcUAGCGCc -3'
miRNA:   3'- -GGUgGCGCGGGGUGCCGGGa---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 14196 0.75 0.18575
Target:  5'- aUCGCCGuCGCCCCAuCGGCCa-CGGCGg -3'
miRNA:   3'- -GGUGGC-GCGGGGU-GCCGGgaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 75196 0.75 0.18575
Target:  5'- gCCAggucCCGCGCCCCAcgcggcugcauCGGCCCU--GCGCg -3'
miRNA:   3'- -GGU----GGCGCGGGGU-----------GCCGGGAguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 67086 0.74 0.194731
Target:  5'- aCGCCGCGuacagaucCCCCAUGGCCgUCuccAGCGCc -3'
miRNA:   3'- gGUGGCGC--------GGGGUGCCGGgAG---UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 40199 0.74 0.208913
Target:  5'- gCGCC-CGCCCuCGCGGCCCcccgCGGCGg -3'
miRNA:   3'- gGUGGcGCGGG-GUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 32930 0.74 0.208913
Target:  5'- gCACCGgaauuCCCCACGGCCCcucgCAGCAg -3'
miRNA:   3'- gGUGGCgc---GGGGUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 159226 0.74 0.208913
Target:  5'- gCGCC-CGCCCuCGCGGCCCcccgCGGCGg -3'
miRNA:   3'- gGUGGcGCGGG-GUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 59135 0.73 0.223978
Target:  5'- gCGCCGcCGCUCCACuGGCCCUCAa--- -3'
miRNA:   3'- gGUGGC-GCGGGGUG-CCGGGAGUcgug -5'
24404 3' -63.8 NC_005264.1 + 7372 0.73 0.238316
Target:  5'- gCCGCCGCGgUuuucauuucuucgaUCGCGGCCC-CGGCGCc -3'
miRNA:   3'- -GGUGGCGCgG--------------GGUGCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 143768 0.73 0.244931
Target:  5'- aCACCGCacaucuuGCCCCGCGGCgggCUUAGuCACg -3'
miRNA:   3'- gGUGGCG-------CGGGGUGCCGg--GAGUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.