miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 83437 0.71 0.30013
Target:  5'- uCCGCCGCgGCCUCGCcacGCCCgCGGCGg -3'
miRNA:   3'- -GGUGGCG-CGGGGUGc--CGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 143768 0.73 0.244931
Target:  5'- aCACCGCacaucuuGCCCCGCGGCgggCUUAGuCACg -3'
miRNA:   3'- gGUGGCG-------CGGGGUGCCGg--GAGUC-GUG- -5'
24404 3' -63.8 NC_005264.1 + 119628 0.73 0.249992
Target:  5'- cCCGCCGUaGCCCCccccccccccgcCGGCCCgcgucgcaggCAGCGCg -3'
miRNA:   3'- -GGUGGCG-CGGGGu-----------GCCGGGa---------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 79704 0.73 0.251128
Target:  5'- aCCAUgagggcagaCGCGCCuCCGCGGCCUU-GGCGCc -3'
miRNA:   3'- -GGUG---------GCGCGG-GGUGCCGGGAgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 42727 0.72 0.256874
Target:  5'- cUCGCUGCGCCCCacuucugcGCGGCaCCcggUgGGCACg -3'
miRNA:   3'- -GGUGGCGCGGGG--------UGCCG-GG---AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 160456 0.72 0.262727
Target:  5'- gCGCCGgGCUCCugcgggcgACGGCCaCUCGGUGCc -3'
miRNA:   3'- gGUGGCgCGGGG--------UGCCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 31233 0.72 0.280935
Target:  5'- uCCGCgCGCGCCCaCGCGcGCCgCUCccuccacaccuaGGCGCc -3'
miRNA:   3'- -GGUG-GCGCGGG-GUGC-CGG-GAG------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 6241 0.72 0.287223
Target:  5'- uCUGCgGCgGCCCCGCGGaUCCUCAGUc- -3'
miRNA:   3'- -GGUGgCG-CGGGGUGCC-GGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 154844 0.71 0.30013
Target:  5'- uCUGCCG-GCCCCgcaaugGCGGCCCgu-GCACg -3'
miRNA:   3'- -GGUGGCgCGGGG------UGCCGGGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 7372 0.73 0.238316
Target:  5'- gCCGCCGCGgUuuucauuucuucgaUCGCGGCCC-CGGCGCc -3'
miRNA:   3'- -GGUGGCGCgG--------------GGUGCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 59135 0.73 0.223978
Target:  5'- gCGCCGcCGCUCCACuGGCCCUCAa--- -3'
miRNA:   3'- gGUGGC-GCGGGGUG-CCGGGAGUcgug -5'
24404 3' -63.8 NC_005264.1 + 159226 0.74 0.208913
Target:  5'- gCGCC-CGCCCuCGCGGCCCcccgCGGCGg -3'
miRNA:   3'- gGUGGcGCGGG-GUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 151956 0.76 0.142637
Target:  5'- gCACCGgGaauuCCCCACGGCCCcucgCAGCAg -3'
miRNA:   3'- gGUGGCgC----GGGGUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 158568 0.76 0.153394
Target:  5'- uCUGCCGcCGCCCCGCGGuuCCCgcgCGGCAa -3'
miRNA:   3'- -GGUGGC-GCGGGGUGCC--GGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 10156 0.76 0.160969
Target:  5'- uCCACCGCGUCCa--GGgCCUCGGCGa -3'
miRNA:   3'- -GGUGGCGCGGGgugCCgGGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 52707 0.75 0.164882
Target:  5'- gCCGCC-CGCCCCcaaaagcgcgGCGGCUCUCGGCc- -3'
miRNA:   3'- -GGUGGcGCGGGG----------UGCCGGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 137637 0.75 0.177136
Target:  5'- gCCACCguguGCGCCaacacguaCGCGGCCCUCAGaUGCu -3'
miRNA:   3'- -GGUGG----CGCGGg-------GUGCCGGGAGUC-GUG- -5'
24404 3' -63.8 NC_005264.1 + 61490 0.75 0.177136
Target:  5'- gCCGaCGCGCCCCGCGGUCUcggcUAGCGCc -3'
miRNA:   3'- -GGUgGCGCGGGGUGCCGGGa---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 75196 0.75 0.18575
Target:  5'- gCCAggucCCGCGCCCCAcgcggcugcauCGGCCCU--GCGCg -3'
miRNA:   3'- -GGU----GGCGCGGGGU-----------GCCGGGAguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 67086 0.74 0.194731
Target:  5'- aCGCCGCGuacagaucCCCCAUGGCCgUCuccAGCGCc -3'
miRNA:   3'- gGUGGCGC--------GGGGUGCCGGgAG---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.