miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 153221 0.65 0.609865
Target:  5'- -gAUCGCGUacagCCACGuuacggaGCCUUCGGCGCa -3'
miRNA:   3'- ggUGGCGCGg---GGUGC-------CGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 24360 0.66 0.571441
Target:  5'- cCCGCCGCucuggcaugaccgGCUUCGCGGCUCcccCGGCGg -3'
miRNA:   3'- -GGUGGCG-------------CGGGGUGCCGGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 93118 0.66 0.562867
Target:  5'- gC-CCGCGCuCCCGCGGUUCacgaUGGCGCc -3'
miRNA:   3'- gGuGGCGCG-GGGUGCCGGGa---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 110641 1.1 0.000513
Target:  5'- gCCACCGCGCCCCACGGCCCUCAGCACa -3'
miRNA:   3'- -GGUGGCGCGGGGUGCCGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28317 0.66 0.601185
Target:  5'- -uGCCGCGCgCCUACGucuaGUCgguaUCGGCACg -3'
miRNA:   3'- ggUGGCGCG-GGGUGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 141638 0.66 0.591561
Target:  5'- aCCGCCGUauugaGUCuaCUACGGCCggcCAGCACg -3'
miRNA:   3'- -GGUGGCG-----CGG--GGUGCCGGga-GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 38410 0.66 0.591561
Target:  5'- -uGCCGCguacGCCCUGCuGGCCCcUGGCAa -3'
miRNA:   3'- ggUGGCG----CGGGGUG-CCGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 38517 0.66 0.591561
Target:  5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3'
miRNA:   3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 66955 0.66 0.581962
Target:  5'- aCCAgCGUGUuuUugGuGCCCaggCGGCACg -3'
miRNA:   3'- -GGUgGCGCGggGugC-CGGGa--GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 3273 0.66 0.572396
Target:  5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3'
miRNA:   3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5'
24404 3' -63.8 NC_005264.1 + 143739 0.66 0.581004
Target:  5'- gUCuCCGCGCCgCCGCGGugcaguccuggcuCCCUauGCGCg -3'
miRNA:   3'- -GGuGGCGCGG-GGUGCC-------------GGGAguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 116391 0.66 0.581962
Target:  5'- gCGCCGCGCaaaagCCGCaGGCCgacgUCgAGCGCa -3'
miRNA:   3'- gGUGGCGCGg----GGUG-CCGGg---AG-UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 75323 0.66 0.601185
Target:  5'- uCUGCCGCGCgCCAgugcCGGUaa-CAGCGCg -3'
miRNA:   3'- -GGUGGCGCGgGGU----GCCGggaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 146079 0.66 0.572396
Target:  5'- aCAgCGCGCCCCcgcGCGGgUCUUGGUg- -3'
miRNA:   3'- gGUgGCGCGGGG---UGCCgGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 31834 0.66 0.601185
Target:  5'- uCUGCCGUGCCgCgCGCGGCaagacaUgGGCGCg -3'
miRNA:   3'- -GGUGGCGCGG-G-GUGCCGgg----AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 66472 0.66 0.585798
Target:  5'- aCCGCCGCGgCCagacucaaugcuugGCGGgCUgcgCGGCGCg -3'
miRNA:   3'- -GGUGGCGCgGGg-------------UGCCgGGa--GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 48546 0.66 0.572396
Target:  5'- cCCG-CGCGCCCC-CGucGCCUUCGucguccGCACa -3'
miRNA:   3'- -GGUgGCGCGGGGuGC--CGGGAGU------CGUG- -5'
24404 3' -63.8 NC_005264.1 + 161622 0.66 0.562867
Target:  5'- aUACCugaggcaCGCCCCACGGCCCauuaCAaCACc -3'
miRNA:   3'- gGUGGc------GCGGGGUGCCGGGa---GUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 126865 0.66 0.601185
Target:  5'- cUCuCCGCGCCCCcuccagGCGaaucGCCaucgUCGGCGCg -3'
miRNA:   3'- -GGuGGCGCGGGG------UGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 148343 0.66 0.591561
Target:  5'- -gACCGUGCCCCG-GGCCggggagcuCUUGGUGCu -3'
miRNA:   3'- ggUGGCGCGGGGUgCCGG--------GAGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.