miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 119628 0.73 0.249992
Target:  5'- cCCGCCGUaGCCCCccccccccccgcCGGCCCgcgucgcaggCAGCGCg -3'
miRNA:   3'- -GGUGGCG-CGGGGu-----------GCCGGGa---------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 601 0.73 0.249992
Target:  5'- cCCGCCGUaGCCCCccccccccccgcCGGCCCgcgucgcaggCAGCGCg -3'
miRNA:   3'- -GGUGGCG-CGGGGu-----------GCCGGGa---------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 79704 0.73 0.251128
Target:  5'- aCCAUgagggcagaCGCGCCuCCGCGGCCUU-GGCGCc -3'
miRNA:   3'- -GGUG---------GCGCGG-GGUGCCGGGAgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 25641 0.72 0.256874
Target:  5'- -gGCCGCGCUCCGCGuuuuCCUcaaUCGGCACg -3'
miRNA:   3'- ggUGGCGCGGGGUGCc---GGG---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 42727 0.72 0.256874
Target:  5'- cUCGCUGCGCCCCacuucugcGCGGCaCCcggUgGGCACg -3'
miRNA:   3'- -GGUGGCGCGGGG--------UGCCG-GG---AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 160456 0.72 0.262727
Target:  5'- gCGCCGgGCUCCugcgggcgACGGCCaCUCGGUGCc -3'
miRNA:   3'- gGUGGCgCGGGG--------UGCCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 87732 0.72 0.262727
Target:  5'- -gACUGCGCCCCAgcuCGGCgC-CGGCGCc -3'
miRNA:   3'- ggUGGCGCGGGGU---GCCGgGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 41429 0.72 0.262727
Target:  5'- gCGCCGgGCUCCugcgggcgACGGCCaCUCGGUGCc -3'
miRNA:   3'- gGUGGCgCGGGG--------UGCCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 31233 0.72 0.280935
Target:  5'- uCCGCgCGCGCCCaCGCGcGCCgCUCccuccacaccuaGGCGCc -3'
miRNA:   3'- -GGUG-GCGCGGG-GUGC-CGG-GAG------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 6241 0.72 0.287223
Target:  5'- uCUGCgGCgGCCCCGCGGaUCCUCAGUc- -3'
miRNA:   3'- -GGUGgCG-CGGGGUGCC-GGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 55638 0.71 0.292976
Target:  5'- aCCGCgCGCGCCgCCgccuuuaguuuugGCGGCCC-CGGUAUc -3'
miRNA:   3'- -GGUG-GCGCGG-GG-------------UGCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 154844 0.71 0.30013
Target:  5'- uCUGCCG-GCCCCgcaaugGCGGCCCgu-GCACg -3'
miRNA:   3'- -GGUGGCgCGGGG------UGCCGGGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 35818 0.71 0.30013
Target:  5'- uCUGCCG-GCCCCgcaaugGCGGCCCgu-GCACg -3'
miRNA:   3'- -GGUGGCgCGGGG------UGCCGGGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 83437 0.71 0.30013
Target:  5'- uCCGCCGCgGCCUCGCcacGCCCgCGGCGg -3'
miRNA:   3'- -GGUGGCG-CGGGGUGc--CGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 158357 0.71 0.313482
Target:  5'- gCACCGCGCCCCuugACGGuuuCCgCUUAGCc- -3'
miRNA:   3'- gGUGGCGCGGGG---UGCC---GG-GAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 157236 0.71 0.313482
Target:  5'- uUCGCgUGgGUCUUcgugGCGGCCCUCGGCGCg -3'
miRNA:   3'- -GGUG-GCgCGGGG----UGCCGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 142325 0.71 0.320324
Target:  5'- -aACgCGUGCCCC-UGGCuUCUCGGCGCa -3'
miRNA:   3'- ggUG-GCGCGGGGuGCCG-GGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 115257 0.71 0.320324
Target:  5'- cCCAaCGCGuCCCCGCGaGCCauaUCuGGCACg -3'
miRNA:   3'- -GGUgGCGC-GGGGUGC-CGGg--AG-UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 68279 0.71 0.327278
Target:  5'- gCCGCCucuuuGCGUCCCcaGCGGCauuuCUCAGUGCg -3'
miRNA:   3'- -GGUGG-----CGCGGGG--UGCCGg---GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 137229 0.71 0.327278
Target:  5'- gCCGCCGUGUUCCGCaacgccGGCCC--GGCGCu -3'
miRNA:   3'- -GGUGGCGCGGGGUG------CCGGGagUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.