miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 66472 0.66 0.585798
Target:  5'- aCCGCCGCGgCCagacucaaugcuugGCGGgCUgcgCGGCGCg -3'
miRNA:   3'- -GGUGGCGCgGGg-------------UGCCgGGa--GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 55139 0.66 0.585798
Target:  5'- cCCGCCguGCGCUgUgcuggcgcagcguauGCGGCCuCUgGGCGCg -3'
miRNA:   3'- -GGUGG--CGCGGgG---------------UGCCGG-GAgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 66955 0.66 0.581962
Target:  5'- aCCAgCGUGUuuUugGuGCCCaggCGGCACg -3'
miRNA:   3'- -GGUgGCGCGggGugC-CGGGa--GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 59705 0.66 0.581962
Target:  5'- gCGCCGCGCgCCGCG-CCggCGGCuACc -3'
miRNA:   3'- gGUGGCGCGgGGUGCcGGgaGUCG-UG- -5'
24404 3' -63.8 NC_005264.1 + 74287 0.66 0.581962
Target:  5'- uUCGCCGCGaucucguaCCUGCGGCgCCaCAGUAUc -3'
miRNA:   3'- -GGUGGCGCg-------GGGUGCCG-GGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 32455 0.66 0.581962
Target:  5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3'
miRNA:   3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5'
24404 3' -63.8 NC_005264.1 + 116391 0.66 0.581962
Target:  5'- gCGCCGCGCaaaagCCGCaGGCCgacgUCgAGCGCa -3'
miRNA:   3'- gGUGGCGCGg----GGUG-CCGGg---AG-UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 110736 0.66 0.581962
Target:  5'- uCCugCuCGCUUCGCGGCCUUCgccgaAGCGg -3'
miRNA:   3'- -GGugGcGCGGGGUGCCGGGAG-----UCGUg -5'
24404 3' -63.8 NC_005264.1 + 151482 0.66 0.581962
Target:  5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3'
miRNA:   3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5'
24404 3' -63.8 NC_005264.1 + 143739 0.66 0.581004
Target:  5'- gUCuCCGCGCCgCCGCGGugcaguccuggcuCCCUauGCGCg -3'
miRNA:   3'- -GGuGGCGCGG-GGUGCC-------------GGGAguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 14 0.66 0.578131
Target:  5'- gCACCGgcaCGCCauaacgCCGCGGCCCUagcuguucgaacgAGCGCu -3'
miRNA:   3'- gGUGGC---GCGG------GGUGCCGGGAg------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 122300 0.66 0.572396
Target:  5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3'
miRNA:   3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5'
24404 3' -63.8 NC_005264.1 + 66206 0.66 0.572396
Target:  5'- gCGgUGCGCCuCCGCGGCCagcgaaggaCUUGGCGa -3'
miRNA:   3'- gGUgGCGCGG-GGUGCCGG---------GAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 146079 0.66 0.572396
Target:  5'- aCAgCGCGCCCCcgcGCGGgUCUUGGUg- -3'
miRNA:   3'- gGUgGCGCGGGG---UGCCgGGAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 3428 0.66 0.572396
Target:  5'- gCGgCGCGCCCCACuucucaggGGUCCgccgcccgUGGCGCc -3'
miRNA:   3'- gGUgGCGCGGGGUG--------CCGGGa-------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 3273 0.66 0.572396
Target:  5'- -aGCCGCaGCgCCACGuCCCUgGGCGa -3'
miRNA:   3'- ggUGGCG-CGgGGUGCcGGGAgUCGUg -5'
24404 3' -63.8 NC_005264.1 + 48546 0.66 0.572396
Target:  5'- cCCG-CGCGCCCC-CGucGCCUUCGucguccGCACa -3'
miRNA:   3'- -GGUgGCGCGGGGuGC--CGGGAGU------CGUG- -5'
24404 3' -63.8 NC_005264.1 + 52942 0.66 0.572396
Target:  5'- -gGCCGCG-CCCGCGGCgCauuGCGCc -3'
miRNA:   3'- ggUGGCGCgGGGUGCCGgGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 69502 0.66 0.572396
Target:  5'- aUACaCGCGUgCCACgccguuagcuGGCCCUaggAGCACg -3'
miRNA:   3'- gGUG-GCGCGgGGUG----------CCGGGAg--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 6896 0.66 0.572396
Target:  5'- -aGCCGCGCaguCCCagcgcGCGGCUUUCcgugGGCGCg -3'
miRNA:   3'- ggUGGCGCG---GGG-----UGCCGGGAG----UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.