miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 24360 0.66 0.571441
Target:  5'- cCCGCCGCucuggcaugaccgGCUUCGCGGCUCcccCGGCGg -3'
miRNA:   3'- -GGUGGCG-------------CGGGGUGCCGGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 143401 0.66 0.569533
Target:  5'- gCCGaugaGCGCCUCGCGccuuauacgcuucaGCCUgUCAGCACa -3'
miRNA:   3'- -GGUgg--CGCGGGGUGC--------------CGGG-AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 70675 0.66 0.569533
Target:  5'- gCCGCCG-GCaggcaauuuuuacgCCCGCGGgCgaCAGCGCg -3'
miRNA:   3'- -GGUGGCgCG--------------GGGUGCCgGgaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 93118 0.66 0.562867
Target:  5'- gC-CCGCGCuCCCGCGGUUCacgaUGGCGCc -3'
miRNA:   3'- gGuGGCGCG-GGGUGCCGGGa---GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 41364 0.66 0.562867
Target:  5'- gCCGCCGCGaaa-ACGGCCuCUCuaauGUACg -3'
miRNA:   3'- -GGUGGCGCggggUGCCGG-GAGu---CGUG- -5'
24404 3' -63.8 NC_005264.1 + 161622 0.66 0.562867
Target:  5'- aUACCugaggcaCGCCCCACGGCCCauuaCAaCACc -3'
miRNA:   3'- gGUGGc------GCGGGGUGCCGGGa---GUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 90554 0.66 0.559068
Target:  5'- gCACCGCGUCuCCucguugcCGGCCaguacgccucugCAGCGCa -3'
miRNA:   3'- gGUGGCGCGG-GGu------GCCGGga----------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 102840 0.66 0.553382
Target:  5'- -gGCCGCGgCCaCGCGGCCgUCu-CGCu -3'
miRNA:   3'- ggUGGCGCgGG-GUGCCGGgAGucGUG- -5'
24404 3' -63.8 NC_005264.1 + 85555 0.66 0.553382
Target:  5'- uCUGCCGCGCaCCCAauucguuccaGGCCCaaGGC-Cg -3'
miRNA:   3'- -GGUGGCGCG-GGGUg---------CCGGGagUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 40353 0.66 0.553382
Target:  5'- cCCAUCGC-CCCCGaGaCCCUCguGGCGCu -3'
miRNA:   3'- -GGUGGCGcGGGGUgCcGGGAG--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 159380 0.66 0.553382
Target:  5'- cCCAUCGC-CCCCGaGaCCCUCguGGCGCu -3'
miRNA:   3'- -GGUGGCGcGGGGUgCcGGGAG--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 98570 0.66 0.553382
Target:  5'- gCGCCGCaagaugaacgGCgCCCGCaGCCC-CAGUAUg -3'
miRNA:   3'- gGUGGCG----------CG-GGGUGcCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 133011 0.66 0.553382
Target:  5'- cCCACUuuGCCCCuacucCGGUUC-CAGCGCc -3'
miRNA:   3'- -GGUGGcgCGGGGu----GCCGGGaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 64601 0.67 0.547713
Target:  5'- gUCAUUGCGCCCauaaccucuccgcagCGCGGCCCgacgccguugCAGUAg -3'
miRNA:   3'- -GGUGGCGCGGG---------------GUGCCGGGa---------GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 27 0.67 0.543945
Target:  5'- -aACUGCGCCCCGCa-CCCaCGGCGa -3'
miRNA:   3'- ggUGGCGCGGGGUGccGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 112520 0.67 0.543945
Target:  5'- aCGCCGCGUaCUCGCGGCUC-CAGg-- -3'
miRNA:   3'- gGUGGCGCG-GGGUGCCGGGaGUCgug -5'
24404 3' -63.8 NC_005264.1 + 58994 0.67 0.543945
Target:  5'- cCgGCCGgGCCCagaagcuUGGCgCUCAGCGa -3'
miRNA:   3'- -GgUGGCgCGGGgu-----GCCGgGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 119054 0.67 0.543945
Target:  5'- -aACUGCGCCCCGCa-CCCaCGGCGa -3'
miRNA:   3'- ggUGGCGCGGGGUGccGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 142684 0.67 0.534561
Target:  5'- -uGCCGCGaUCUugGGCgCCggCGGCGCg -3'
miRNA:   3'- ggUGGCGCgGGGugCCG-GGa-GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 128542 0.67 0.534561
Target:  5'- gCGCgGCGCCCUcgaGgGGCCCUCGa--- -3'
miRNA:   3'- gGUGgCGCGGGG---UgCCGGGAGUcgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.