miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 10156 0.76 0.160969
Target:  5'- uCCACCGCGUCCa--GGgCCUCGGCGa -3'
miRNA:   3'- -GGUGGCGCGGGgugCCgGGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 12274 0.67 0.496738
Target:  5'- -gGCCGUccGCCCCcaccccaACGGCCCUCccCGCc -3'
miRNA:   3'- ggUGGCG--CGGGG-------UGCCGGGAGucGUG- -5'
24404 3' -63.8 NC_005264.1 + 12637 0.67 0.525235
Target:  5'- cCCACuCGCucGCCCUcCGGCCCcCGuCACa -3'
miRNA:   3'- -GGUG-GCG--CGGGGuGCCGGGaGUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 14196 0.75 0.18575
Target:  5'- aUCGCCGuCGCCCCAuCGGCCa-CGGCGg -3'
miRNA:   3'- -GGUGGC-GCGGGGU-GCCGGgaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 14490 0.69 0.419243
Target:  5'- gCACCaagaGCUCCcCGGCCCggGGCACg -3'
miRNA:   3'- gGUGGcg--CGGGGuGCCGGGagUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 14680 0.68 0.488594
Target:  5'- gCUGCCGgGgCCCAuacuUGGCCCUUcgcgagcagAGCACu -3'
miRNA:   3'- -GGUGGCgCgGGGU----GCCGGGAG---------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 18316 0.69 0.427588
Target:  5'- cCCGCCcUGCCaguugccucugcCCACGacGCCUUCGGCACu -3'
miRNA:   3'- -GGUGGcGCGG------------GGUGC--CGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 20156 0.68 0.47962
Target:  5'- gCCGCCgGCGCCCaagauCGCGGCacgaCguagaAGCACg -3'
miRNA:   3'- -GGUGG-CGCGGG-----GUGCCGg---Gag---UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 21988 0.67 0.506773
Target:  5'- gCCGCCGgcugucguCGCCUCuugauuuUGGCCUUCGGUGCc -3'
miRNA:   3'- -GGUGGC--------GCGGGGu------GCCGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 24360 0.66 0.571441
Target:  5'- cCCGCCGCucuggcaugaccgGCUUCGCGGCUCcccCGGCGg -3'
miRNA:   3'- -GGUGGCG-------------CGGGGUGCCGGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 24631 0.67 0.510444
Target:  5'- gUCACCGCGCagcgcaugcuuaaucCCCACGGUUCUgGcCACc -3'
miRNA:   3'- -GGUGGCGCG---------------GGGUGCCGGGAgUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 25641 0.72 0.256874
Target:  5'- -gGCCGCGCUCCGCGuuuuCCUcaaUCGGCACg -3'
miRNA:   3'- ggUGGCGCGGGGUGCc---GGG---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 26378 0.68 0.43603
Target:  5'- gCGCgGCGCCgucucugagCGCGG-CCUCAGCGCc -3'
miRNA:   3'- gGUGgCGCGGg--------GUGCCgGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28317 0.66 0.601185
Target:  5'- -uGCCGCGCgCCUACGucuaGUCgguaUCGGCACg -3'
miRNA:   3'- ggUGGCGCG-GGGUGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28885 0.67 0.506773
Target:  5'- gCCACCGCGaagaCCC-CGGCCa--AGCu- -3'
miRNA:   3'- -GGUGGCGCg---GGGuGCCGGgagUCGug -5'
24404 3' -63.8 NC_005264.1 + 30082 0.68 0.468958
Target:  5'- gCCGCCGCGCCCggacagaaucgcgagUcgagaugcgggcggcGCGGCaCCgagcugCGGCGCa -3'
miRNA:   3'- -GGUGGCGCGGG---------------G---------------UGCCG-GGa-----GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 31233 0.72 0.280935
Target:  5'- uCCGCgCGCGCCCaCGCGcGCCgCUCccuccacaccuaGGCGCc -3'
miRNA:   3'- -GGUG-GCGCGGG-GUGC-CGG-GAG------------UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 31387 0.7 0.379048
Target:  5'- gCACCGCGCCUCcaagcacguaGCGGgccgCCUCGGgGCg -3'
miRNA:   3'- gGUGGCGCGGGG----------UGCCg---GGAGUCgUG- -5'
24404 3' -63.8 NC_005264.1 + 31834 0.66 0.601185
Target:  5'- uCUGCCGUGCCgCgCGCGGCaagacaUgGGCGCg -3'
miRNA:   3'- -GGUGGCGCGG-G-GUGCCGgg----AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 32455 0.66 0.581962
Target:  5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3'
miRNA:   3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.