miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 161622 0.66 0.562867
Target:  5'- aUACCugaggcaCGCCCCACGGCCCauuaCAaCACc -3'
miRNA:   3'- gGUGGc------GCGGGGUGCCGGGa---GUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 160456 0.72 0.262727
Target:  5'- gCGCCGgGCUCCugcgggcgACGGCCaCUCGGUGCc -3'
miRNA:   3'- gGUGGCgCGGGG--------UGCCGG-GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 159966 0.69 0.410999
Target:  5'- gCGCCGCGCCCCggucgaucGCaGCCg-CAGCGg -3'
miRNA:   3'- gGUGGCGCGGGG--------UGcCGGgaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 159840 0.68 0.461919
Target:  5'- -aGCCGaGCCgC-CGGCCCagUCGGCGCu -3'
miRNA:   3'- ggUGGCgCGGgGuGCCGGG--AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 159380 0.66 0.553382
Target:  5'- cCCAUCGC-CCCCGaGaCCCUCguGGCGCu -3'
miRNA:   3'- -GGUGGCGcGGGGUgCcGGGAG--UCGUG- -5'
24404 3' -63.8 NC_005264.1 + 159226 0.74 0.208913
Target:  5'- gCGCC-CGCCCuCGCGGCCCcccgCGGCGg -3'
miRNA:   3'- gGUGGcGCGGG-GUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 158856 0.69 0.419243
Target:  5'- cCCGCCGcCGCCgaaUGCGGCUaaCAGCAUa -3'
miRNA:   3'- -GGUGGC-GCGGg--GUGCCGGgaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 158568 0.76 0.153394
Target:  5'- uCUGCCGcCGCCCCGCGGuuCCCgcgCGGCAa -3'
miRNA:   3'- -GGUGGC-GCGGGGUGCC--GGGa--GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 158357 0.71 0.313482
Target:  5'- gCACCGCGCCCCuugACGGuuuCCgCUUAGCc- -3'
miRNA:   3'- gGUGGCGCGGGG---UGCC---GG-GAGUCGug -5'
24404 3' -63.8 NC_005264.1 + 157544 0.66 0.591561
Target:  5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3'
miRNA:   3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 157437 0.66 0.591561
Target:  5'- -uGCCGCguacGCCCUGCuGGCCCcUGGCAa -3'
miRNA:   3'- ggUGGCG----CGGGGUG-CCGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 157236 0.71 0.313482
Target:  5'- uUCGCgUGgGUCUUcgugGCGGCCCUCGGCGCg -3'
miRNA:   3'- -GGUG-GCgCGGGG----UGCCGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 157218 0.69 0.394814
Target:  5'- aCACCuaGCGUCgCGCGGCCCgauagCGGCu- -3'
miRNA:   3'- gGUGG--CGCGGgGUGCCGGGa----GUCGug -5'
24404 3' -63.8 NC_005264.1 + 154844 0.71 0.30013
Target:  5'- uCUGCCG-GCCCCgcaaugGCGGCCCgu-GCACg -3'
miRNA:   3'- -GGUGGCgCGGGG------UGCCGGGaguCGUG- -5'
24404 3' -63.8 NC_005264.1 + 153738 0.68 0.456675
Target:  5'- gUCACCGaagacccauauucgGCCCCAgcUGGCaucgcucguCCUCAGCGCg -3'
miRNA:   3'- -GGUGGCg-------------CGGGGU--GCCG---------GGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 153221 0.65 0.609865
Target:  5'- -gAUCGCGUacagCCACGuuacggaGCCUUCGGCGCa -3'
miRNA:   3'- ggUGGCGCGg---GGUGC-------CGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 153203 0.68 0.461919
Target:  5'- gCACUGCcccCCCCAacgaccagaucUGGCCUgcUCAGCGCa -3'
miRNA:   3'- gGUGGCGc--GGGGU-----------GCCGGG--AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 152304 0.67 0.534561
Target:  5'- --uCCGCGCCCCugaggGCGGCgCCgcaCAGgACc -3'
miRNA:   3'- gguGGCGCGGGG-----UGCCG-GGa--GUCgUG- -5'
24404 3' -63.8 NC_005264.1 + 151956 0.76 0.142637
Target:  5'- gCACCGgGaauuCCCCACGGCCCcucgCAGCAg -3'
miRNA:   3'- gGUGGCgC----GGGGUGCCGGGa---GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 151482 0.66 0.581962
Target:  5'- gCCACCGCauGCCCCAgaUGGCaguuCCUCGcCAg -3'
miRNA:   3'- -GGUGGCG--CGGGGU--GCCG----GGAGUcGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.