miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 52525 0.67 0.940897
Target:  5'- aUUUCGUGcGccGCGuGGCAGAGUacUGCa -3'
miRNA:   3'- aAAAGCGCuCuuCGC-UCGUCUCG--ACG- -5'
24409 3' -52.7 NC_005264.1 + 29240 0.68 0.935951
Target:  5'- ----gGuCGAGGAGCacAGCGGAGaCUGCg -3'
miRNA:   3'- aaaagC-GCUCUUCGc-UCGUCUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 102183 0.68 0.935951
Target:  5'- ---gCGCGAcGAAGgaaaCGAGCAGgcggggaucaAGCUGCu -3'
miRNA:   3'- aaaaGCGCU-CUUC----GCUCGUC----------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 156698 0.68 0.935951
Target:  5'- ---gCGCGAGAcccaGGaCGGGCGGuGCUucGCg -3'
miRNA:   3'- aaaaGCGCUCU----UC-GCUCGUCuCGA--CG- -5'
24409 3' -52.7 NC_005264.1 + 113386 0.68 0.93075
Target:  5'- ----gGCGAGuGAGCGcgcacauucuAGCAGcGCUGCg -3'
miRNA:   3'- aaaagCGCUC-UUCGC----------UCGUCuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 36292 0.68 0.930215
Target:  5'- ----gGCGAGGAGaGGGCGGAcgucgucgcuaucGCUGCc -3'
miRNA:   3'- aaaagCGCUCUUCgCUCGUCU-------------CGACG- -5'
24409 3' -52.7 NC_005264.1 + 155319 0.68 0.930215
Target:  5'- ----gGCGAGGAGaGGGCGGAcgucgucgcuaucGCUGCc -3'
miRNA:   3'- aaaagCGCUCUUCgCUCGUCU-------------CGACG- -5'
24409 3' -52.7 NC_005264.1 + 50574 0.68 0.925292
Target:  5'- ---gUGCGGGAAGCGcacGCGGcGCUGa -3'
miRNA:   3'- aaaaGCGCUCUUCGCu--CGUCuCGACg -5'
24409 3' -52.7 NC_005264.1 + 5085 0.68 0.925292
Target:  5'- ---aCGUGGGuuGGCGAGgAGAGCcagucUGCg -3'
miRNA:   3'- aaaaGCGCUCu-UCGCUCgUCUCG-----ACG- -5'
24409 3' -52.7 NC_005264.1 + 31957 0.68 0.925292
Target:  5'- --cUCGCGAGuGGCG-GCGacGGGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuUCGCuCGU--CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 150984 0.68 0.925292
Target:  5'- --cUCGCGAGuGGCG-GCGacGGGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuUCGCuCGU--CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 33951 0.68 0.919577
Target:  5'- --gUCGuCGAGGA-CGAGCGGuGCcGCa -3'
miRNA:   3'- aaaAGC-GCUCUUcGCUCGUCuCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 14845 0.68 0.919577
Target:  5'- ---cCGCGAGAAGUucGuGCAGAGgCUuGCc -3'
miRNA:   3'- aaaaGCGCUCUUCG--CuCGUCUC-GA-CG- -5'
24409 3' -52.7 NC_005264.1 + 37373 0.68 0.919577
Target:  5'- ----aGCGAGccucCGAGCAGGGCgcgGCa -3'
miRNA:   3'- aaaagCGCUCuuc-GCUCGUCUCGa--CG- -5'
24409 3' -52.7 NC_005264.1 + 59060 0.68 0.913606
Target:  5'- ---cCGCGAucuuguuguuGGCGAGCAGGGUgUGCa -3'
miRNA:   3'- aaaaGCGCUcu--------UCGCUCGUCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 59239 0.68 0.913606
Target:  5'- -aUUCGCGGGAAucGCG-GUAGcGGCUaGCa -3'
miRNA:   3'- aaAAGCGCUCUU--CGCuCGUC-UCGA-CG- -5'
24409 3' -52.7 NC_005264.1 + 96486 0.69 0.907381
Target:  5'- -gUUCGUGAuaGAGGCGAGCGucGuGCaGCa -3'
miRNA:   3'- aaAAGCGCU--CUUCGCUCGU--CuCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 3814 0.69 0.907381
Target:  5'- ---cCGCGAGuucgGGCccGGGCGGGGCcGCa -3'
miRNA:   3'- aaaaGCGCUCu---UCG--CUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 122840 0.69 0.907381
Target:  5'- ---cCGCGAGuucgGGCccGGGCGGGGCcGCa -3'
miRNA:   3'- aaaaGCGCUCu---UCG--CUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 124287 0.69 0.905464
Target:  5'- ---gCGcCGGGAGGCGAgucgcggccggacgGCGGGGCgGCg -3'
miRNA:   3'- aaaaGC-GCUCUUCGCU--------------CGUCUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.