miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 29240 0.68 0.935951
Target:  5'- ----gGuCGAGGAGCacAGCGGAGaCUGCg -3'
miRNA:   3'- aaaagC-GCUCUUCGc-UCGUCUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 30101 0.76 0.548723
Target:  5'- --aUCGCGAGucgagauGCGGGCGgcgcggcaccGAGCUGCg -3'
miRNA:   3'- aaaAGCGCUCuu-----CGCUCGU----------CUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31003 0.69 0.886491
Target:  5'- gUUUCGCGGGAgaucaucucucugGGCGAcggugccgccuaGCGGucgugcGGCUGCg -3'
miRNA:   3'- aAAAGCGCUCU-------------UCGCU------------CGUC------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31164 0.73 0.706555
Target:  5'- gUUUCGUGuGAcgggggccggagGGCGAGCgagugggacggGGGGCUGCg -3'
miRNA:   3'- aAAAGCGCuCU------------UCGCUCG-----------UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31673 0.73 0.696153
Target:  5'- ---gCGCGAGGcagGGCucucGGCGGGGCUGCc -3'
miRNA:   3'- aaaaGCGCUCU---UCGc---UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31957 0.68 0.925292
Target:  5'- --cUCGCGAGuGGCG-GCGacGGGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuUCGCuCGU--CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 33951 0.68 0.919577
Target:  5'- --gUCGuCGAGGA-CGAGCGGuGCcGCa -3'
miRNA:   3'- aaaAGC-GCUCUUcGCUCGUCuCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 36232 0.7 0.848817
Target:  5'- ---cCGCGAGGuuuAG-GGGCGGAGCcGCa -3'
miRNA:   3'- aaaaGCGCUCU---UCgCUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 36292 0.68 0.930215
Target:  5'- ----gGCGAGGAGaGGGCGGAcgucgucgcuaucGCUGCc -3'
miRNA:   3'- aaaagCGCUCUUCgCUCGUCU-------------CGACG- -5'
24409 3' -52.7 NC_005264.1 + 37373 0.68 0.919577
Target:  5'- ----aGCGAGccucCGAGCAGGGCgcgGCa -3'
miRNA:   3'- aaaagCGCUCuuc-GCUCGUCUCGa--CG- -5'
24409 3' -52.7 NC_005264.1 + 39060 0.66 0.969527
Target:  5'- -gUUCGCGcggcgguccacccccGGAcgccggcucGGCGGGCAGcggcgucuggaccAGCUGCu -3'
miRNA:   3'- aaAAGCGC---------------UCU---------UCGCUCGUC-------------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 39221 0.66 0.974428
Target:  5'- ---cCGCGGcgcuGGCGGGgAGGGcCUGCg -3'
miRNA:   3'- aaaaGCGCUcu--UCGCUCgUCUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 42713 0.71 0.805182
Target:  5'- ---gCGCGAGA----GGUAGAGCUGCg -3'
miRNA:   3'- aaaaGCGCUCUucgcUCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 48674 0.66 0.974428
Target:  5'- ----gGCGAGGAGaucuGGGCGcGAGuCUGCu -3'
miRNA:   3'- aaaagCGCUCUUCg---CUCGU-CUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 49842 0.66 0.97162
Target:  5'- ---gCGCGAGcAcguacgccgcAGCcuucuGGCGGAGCUGCu -3'
miRNA:   3'- aaaaGCGCUC-U----------UCGc----UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 50574 0.68 0.925292
Target:  5'- ---gUGCGGGAAGCGcacGCGGcGCUGa -3'
miRNA:   3'- aaaaGCGCUCUUCGCu--CGUCuCGACg -5'
24409 3' -52.7 NC_005264.1 + 52525 0.67 0.940897
Target:  5'- aUUUCGUGcGccGCGuGGCAGAGUacUGCa -3'
miRNA:   3'- aAAAGCGCuCuuCGC-UCGUCUCG--ACG- -5'
24409 3' -52.7 NC_005264.1 + 52851 0.66 0.976269
Target:  5'- ---aCGCGGGAgcugcgcgcauAcgacgugcacacgcGCGAGCgaGGGGCUGCg -3'
miRNA:   3'- aaaaGCGCUCU-----------U--------------CGCUCG--UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 56218 0.66 0.97162
Target:  5'- --gUCGuCGAGAucacuGGCGAGCGucGCgcgGCu -3'
miRNA:   3'- aaaAGC-GCUCU-----UCGCUCGUcuCGa--CG- -5'
24409 3' -52.7 NC_005264.1 + 59060 0.68 0.913606
Target:  5'- ---cCGCGAucuuguuguuGGCGAGCAGGGUgUGCa -3'
miRNA:   3'- aaaaGCGCUcu--------UCGCUCGUCUCG-ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.