miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 2615 0.66 0.977027
Target:  5'- ---gCGCGAGccGAGCaGGCGGGGCg-- -3'
miRNA:   3'- aaaaGCGCUC--UUCGcUCGUCUCGacg -5'
24409 3' -52.7 NC_005264.1 + 3613 0.66 0.977027
Target:  5'- ---cCGCGGGggGCcgcgaGGGCGGGcgcGCUGa -3'
miRNA:   3'- aaaaGCGCUCuuCG-----CUCGUCU---CGACg -5'
24409 3' -52.7 NC_005264.1 + 3814 0.69 0.907381
Target:  5'- ---cCGCGAGuucgGGCccGGGCGGGGCcGCa -3'
miRNA:   3'- aaaaGCGCUCu---UCG--CUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 4279 0.66 0.97162
Target:  5'- ---cCGCGGGGcGGCG-GCAGAGa-GCa -3'
miRNA:   3'- aaaaGCGCUCU-UCGCuCGUCUCgaCG- -5'
24409 3' -52.7 NC_005264.1 + 4489 0.7 0.84048
Target:  5'- ---gCGCGAGGGucGCGAGCGGAGggGg -3'
miRNA:   3'- aaaaGCGCUCUU--CGCUCGUCUCgaCg -5'
24409 3' -52.7 NC_005264.1 + 5085 0.68 0.925292
Target:  5'- ---aCGUGGGuuGGCGAGgAGAGCcagucUGCg -3'
miRNA:   3'- aaaaGCGCUCu-UCGCUCgUCUCG-----ACG- -5'
24409 3' -52.7 NC_005264.1 + 5260 0.69 0.905464
Target:  5'- ---gCGcCGGGAGGCGAgucgcggccggacgGCGGGGCgGCg -3'
miRNA:   3'- aaaaGC-GCUCUUCGCU--------------CGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 5397 0.66 0.97162
Target:  5'- --cUUGCcAGggGCcAGCAGGGCguacGCg -3'
miRNA:   3'- aaaAGCGcUCuuCGcUCGUCUCGa---CG- -5'
24409 3' -52.7 NC_005264.1 + 6344 0.66 0.974428
Target:  5'- ---gUGCGAuacGCGGGacaGGGGCUGCa -3'
miRNA:   3'- aaaaGCGCUcuuCGCUCg--UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 8654 0.7 0.864852
Target:  5'- gUUUCGCGcGAAGUauucGGGCAu-GCUGCa -3'
miRNA:   3'- aAAAGCGCuCUUCG----CUCGUcuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 8836 0.82 0.258151
Target:  5'- cUUUCGCGGGAAGCc-GCAGAGCgUGCc -3'
miRNA:   3'- aAAAGCGCUCUUCGcuCGUCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 11632 0.72 0.776911
Target:  5'- --gUCGUG-GAacgguaucAGCGcGGCAGGGCUGCu -3'
miRNA:   3'- aaaAGCGCuCU--------UCGC-UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 11873 0.66 0.974428
Target:  5'- --cUCGCGAGcucaGAGCcGAGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuucgCUCGuCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 13280 0.67 0.95003
Target:  5'- -gUUCGCGccagcGAGGCGGGUcguGGAGCUc- -3'
miRNA:   3'- aaAAGCGCu----CUUCGCUCG---UCUCGAcg -5'
24409 3' -52.7 NC_005264.1 + 13611 0.7 0.856944
Target:  5'- --aUCGCGgucGGGAcGCGGGCAgGGGCgGCg -3'
miRNA:   3'- aaaAGCGC---UCUU-CGCUCGU-CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 14845 0.68 0.919577
Target:  5'- ---cCGCGAGAAGUucGuGCAGAGgCUuGCc -3'
miRNA:   3'- aaaaGCGCUCUUCG--CuCGUCUC-GA-CG- -5'
24409 3' -52.7 NC_005264.1 + 15766 0.67 0.954223
Target:  5'- ---gCGCGAGcguggcuccGGGCGAGCAGAGa--- -3'
miRNA:   3'- aaaaGCGCUC---------UUCGCUCGUCUCgacg -5'
24409 3' -52.7 NC_005264.1 + 19064 0.66 0.971327
Target:  5'- ---cCGCGGGAAGCGcGCuucccgcgcauagGGAGCcaggacUGCa -3'
miRNA:   3'- aaaaGCGCUCUUCGCuCG-------------UCUCG------ACG- -5'
24409 3' -52.7 NC_005264.1 + 20071 0.67 0.954223
Target:  5'- ---cCGCGuacuGCGAGUAGAGCuUGUc -3'
miRNA:   3'- aaaaGCGCucuuCGCUCGUCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 20238 0.7 0.856944
Target:  5'- ---gCGCGuGAcgGGUGGGCAgGGGUUGCg -3'
miRNA:   3'- aaaaGCGCuCU--UCGCUCGU-CUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.